Roseovarius sp. AK1035: RAK1035_2615
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Entry
RAK1035_2615 CDS
T05517
Name
(GenBank) Helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
rok
Roseovarius sp. AK1035
Pathway
rok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RAK1035_2615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rok03019
]
RAK1035_2615
03009 Ribosome biogenesis [BR:
rok03009
]
RAK1035_2615
Enzymes [BR:
rok01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
RAK1035_2615
Messenger RNA biogenesis [BR:
rok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RAK1035_2615
Ribosome biogenesis [BR:
rok03009
]
Prokaryotic type
rRNA helicases
RAK1035_2615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AWZ21323
LinkDB
All DBs
Position
complement(2690219..2692498)
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AA seq
759 aa
AA seq
DB search
MILPALSNALAARGYETLTPVQEAVTDPALSGSDLLVSAQTGSGKTVGFGLAIAPTLLGG
EDRLPPAAAPLALIVAPTRELALQVMRELSWLYAEAGARLVTCVGGMDARDERRALERGA
HIVVGTPGRLCDHINRGALDMTSLRAIVLDEADEMLDLGFREDLEFMLAAAPEDRRTLMF
SATVPPMIAKLAEKFQRDAQRVTTLTGAKQHADIAYQALTVSPQDAEGAVINLLRYHDAQ
NAIVFANTRAMVARLTARLSNRGFAVVSLSGELSQSERTHALQAMRDGRARVCVATDVAA
RGIDLPNLDLVVHAELPTNSEGLLHRSGRTGRAGRKGISALIVPLKSANKAERLLKFAKI
TAEWTTPPTPEDIEAKDRERLLSDPVWSETPSETEGAFAAELLALHSPEVIAAAYLRLYK
SRWSAPEELSAPGAPAPARERSAFGPSRWFALSVGNDDRAEARWLLPLLCRAGNLDKSAI
GAIRVQAAETFVELAEAAVPGFLSSLGEGGQLDEGITARALDSAPAFAPAPRAPREDRPE
RAPRAPREDRPARAPREYGGSRDHSAPRTAPKPRPKPAGAPPAAMTRAVEDGTVTPYRKP
RAEAGDAPRPAKKPWSGDKPAGKPANKPFGKPAGDRKPGKSFGKPEGRPYDKSDSKPGAK
PYGKPGAKPSDKPFDKPRARPTPRDAEPAAPRPNLAADTSKRFVPPGAAKKPGKPGTGKT
FAGKPGAGKPAAGKPKGKGAAPKARAGFGGSTPPKRGKP
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgcctgccctctccaatgctcttgccgcgcgcggctatgaaaccctgacgcct
gtgcaagaggcggtaacggaccccgcgctgtctggctctgatcttctggtctcggcccag
accggatctggtaaaaccgtggggtttggccttgcgatcgcgcccaccctgctggggggt
gaggaccgcttgccgcctgccgccgcaccgctggccctgatcgtggccccaacgcgagag
ctggcgcttcaggtcatgcgcgagctgagctggctttatgccgaagccggtgcgcgtttg
gtcacttgcgttggcgggatggatgcccgtgacgagcggcgcgcgctggagcgcggggcg
catattgttgtcggcacgcccggacgtctgtgtgaccacatcaatcgcggcgcgctcgac
atgacaagcctgcgcgccatcgtgcttgacgaggccgatgagatgctcgatctcggtttt
cgcgaagacctcgaattcatgctggccgcagcgcccgaagatcgccgcacgctgatgttt
tcggccaccgtgccgccgatgatcgccaagctggctgagaaattccagcgcgatgcgcag
cgtgtgaccacgctcaccggcgcgaaacagcatgctgatatcgcctatcaggcgctgact
gtgtcaccgcaagatgccgagggcgccgtgatcaacctgctgcgttatcacgatgcccag
aatgcgattgtgttcgccaatacccgcgccatggtagcccgcctgacggcacgcctgtcc
aatcgcggctttgccgtggtctcgctctcaggtgagttgagccagtccgagcgcacccat
gccctgcaggcgatgcgcgacgggcgggcccgggtctgtgttgccaccgatgtcgccgcg
cggggcatcgacctgcccaaccttgatctggtcgtgcatgccgaactgcccaccaattcc
gaaggcctcttgcaccgctcgggccgaacgggtcgcgccggacgcaagggcatctctgcc
cttatcgttccgctcaaatcggcaaacaaggcagagcgcctgctcaaattcgccaagatc
accgcagaatggaccacgccccccacgcccgaggatatcgaggccaaggatcgcgagcgc
ctgttgtccgacccggtctggtccgaaacgccgtccgagaccgaaggtgcctttgccgct
gaattgctggcgctgcacagccccgaggtgatcgccgccgcctacctgcgtctttacaaa
tcgcgctggtccgcacccgaggaactgagcgcgcccggcgcgccagctccggcgcgcgag
cggtcggcctttggcccaagccgctggtttgcgctgtcggttggcaatgacgaccgggcc
gaggcgcggtggttgctcccgcttttgtgccgtgctggcaatctcgacaaatccgcgatt
ggggccatccgcgtgcaggctgccgaaacctttgtcgaactggcagaggccgccgttccc
ggatttctttcgtcgctcggtgagggcgggcaactggatgagggcatcaccgcccgcgcc
ctggatagtgccccggcgtttgcccctgccccgcgcgccccgcgcgaagatcgtcccgaa
cgtgcgccccgcgccccgcgagaggaccgccctgcgcgcgcgccccgcgagtatggcggc
tcgcgcgaccattctgccccacgcaccgcccccaagccgcgcccgaaaccggcaggtgcg
ccgcccgcggcaatgacccgcgcggtcgaggatggcacggtaaccccgtatcgcaaaccg
cgtgcagaggcgggcgatgcgccgcgcccggccaaaaagccttggtccggtgacaagccc
gctggcaaacctgccaacaagccctttggcaagcccgccggggatcgcaaacccggtaaa
tcctttggcaagcccgaaggtcggccctatgacaagtcggatagcaaacccggcgcaaag
ccctatggcaagccgggggcgaaaccgtcggacaaaccctttgacaagccgcgcgcgcgc
cctacgccccgtgacgcggaaccagccgcgcccagacccaatcttgcggccgatacgtcc
aaacggtttgttccacccggagcggcgaaaaagcccggcaaacccggcacaggcaagacc
tttgctggcaaacccggcgcgggaaagcctgccgctggaaagcccaaaggcaaaggtgct
gcacccaaagcccgcgcgggatttggcggcagcaccccaccgaagcgcggcaagccgtga
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