Raoultella ornithinolytica S12: TE10_25020
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Entry
TE10_25020 CDS
T03629
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ron
Raoultella ornithinolytica S12
Pathway
ron02020
Two-component system
ron02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ron00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TE10_25020
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TE10_25020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ron03021
]
TE10_25020
Transcription machinery [BR:
ron03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TE10_25020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AJF75109
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All DBs
Position
5445778..5447211
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AA seq
477 aa
AA seq
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MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHEEVETKE
VEDRESLDTVDALEQKDMPEELPLDASWDEIYTAGTPSGNGVDYQDDELPIYQGETTQSL
QDYLMWQVQLTPFTDTDRAIATSIVDAVDDTGYLTLRVEDIVESIDDDEIGLEEVEAVLK
RIQRFDPVGVAAKDLRDCLLVQLSQFAKETPWLEEARLIISDHLDLLANHDFRSLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKVSERWVVELNSDSIPRLKIN
QHYAAMGNSTRNDADSQFIRSNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEE
FMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTTILSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaattaaggctcagccaacagcttgccatgacgccacaactgcag
caggccattcgtttgctgcagctgtccacgttagaactccagcaggaactccagcaggcg
ctggagagtaatccgttgcttgagcaaaccgatcttcatgaagaggtagaaacgaaagaa
gttgaggaccgcgagtctctggataccgtggacgcccttgagcaaaaagatatgcccgag
gagctgccgctcgacgccagctgggatgagatctacaccgccggcacgccttctggcaac
ggcgtcgattaccaggatgacgagctgcctatctatcaaggtgaaacgactcagagcctg
caggattacctgatgtggcaggtccagctgacaccgttcaccgataccgaccgcgctatc
gccacctctatcgtcgatgccgttgatgataccggctacctcaccctgcgggtggaggat
atcgttgagagcattgacgatgacgaaatcggcctcgaagaagttgaagcggtactgaag
cgcatccagcgttttgacccggttggcgtcgcggcaaaagatctgcgcgactgcctgctg
gttcagctctcacagtttgccaaagagacgccgtggctggaagaggcccggcttatcatc
agcgatcatctcgatctgctcgccaaccacgactttcgctccctgatgcgcgttacgcgg
ctgaaagaggacgttctgaaagaagcggttaatctgatccagtcgttagatccgcgcccg
ggccagtcgatccaaaccagcgaaccggaatacgtgatcccggatgtgctggtgcgtaag
gtgagcgaacgctgggtcgtagagctgaattccgacagcatcccgcgcctgaagatcaac
cagcactacgccgcaatgggcaacagcacgcgtaacgacgccgatagccagtttatccgc
agcaacctgcaggaagcccgctggctgatcaaaagcctggaaagccgcaacgatacgctg
ctgcgcgtcagccgctgcatcgtcgaacagcagcaggccttctttgaacagggcgaagag
tttatgaaaccgatggtgctggcggatatcgctcaggccgtcgaaatgcatgaatcgacg
atttcacgcgtgaccacgcaaaagtacctgcacagcccgcgcggtatttttgaactgaag
tatttcttctccagccacgtgaataccgaaggcggaggcgaggcatcgtcgaccgccatt
cgcgcgctggtgaagaagttaatcgccgcggagaaccccgcgaagccgttgagtgacagt
aagctcaccaccatcctgtctgaacagggtatcatggtggcgcgccgcaccgtcgctaag
taccgagagtctttatccattccgccgtctaaccagcgtaaacagctggtgtga
DBGET
integrated database retrieval system