KEGG   Rhodococcus opacus B4: ROP_pROB01-05350Help
Entry
ROP_pROB01-05350  CDS       T00882                                 

Definition
(GenBank) putative ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rop  Rhodococcus opacus B4
Pathway
rop03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ROP_pROB01-05350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rop03400]
    ROP_pROB01-05350
Enzymes [BR:rop01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ROP_pROB01-05350
DNA repair and recombination proteins [BR:rop03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ROP_pROB01-05350
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: BAH56034
NITE: ROP_pROB01-05350
UniProt: C1BCH9
LinkDB All DBs
Position
pROB01:501418..502413
Genome map
AA seq 331 aa AA seqDB search
MSGAGNRLIAPMLSTPGEPPVEMDGWAAEMKYDGFRLLAGVGGGAHPVLWTRNLNVVTSS
YPEVTEALTEAFGGHGRIVFDGEIVALTQGRPSFARLQKRANTLRPTTALRRQVPVIFLP
FDVLRLDGDDLMGAPYLDRRAALTDLGHQLQGAVLPIQIPPHWEGIEGMVMLEAVRSSGM
EGAVFKRVSSLYLPGQRTRAWRKVLIRTRVSCVVLGWIPAGGMQHNMVGALVLGAYDDQG
ALRYVGHVGTGFTQAGRRQLGEQLAALERPTSPIVAESAAAEQHGVVRWVHPIVVVDIDI
REYGPGGLRHPSYKGQRPDLDPEGVKWDSLQ
NT seq 996 nt NT seq  +upstreamnt  +downstreamnt
atgagcggagctgggaatcggctgatcgcgccgatgctgtccacaccgggtgaaccaccg
gtggaaatggacggctgggcggccgaaatgaagtacgacggcttccgcctattagctggg
gtcggtggcggcgcgcatccggtgctgtggacccgcaacctcaacgttgtcacttcctcc
tacccggaggtgaccgaggcgctgaccgaggcattcggtggtcacgggcgcatcgtcttc
gacggtgaaatcgtcgccctcacgcaaggtcggccttcgttcgcacgcctgcagaagcgg
gcgaacaccctgcgcccgaccaccgccctgcgccggcaggtaccggtcattttcctgccg
ttcgatgtgctccggctcgacggggacgacctgatgggtgccccgtacctcgatcgccgc
gccgccctcaccgacctcggccaccaactccagggcgctgtcctcccgatccaaatccca
ccacattgggaaggcatcgagggtatggtcatgctcgaagcggttcgcagctcgggtatg
gaaggtgctgtgttcaaacgtgtttcgtcgctgtaccttcccggtcagcgtacccgggcg
tggcggaaggtgttgatccgtacccgggtgagctgcgtggttctcgggtggattcctgct
ggcgggatgcagcacaacatggttggcgcccttgtgctcggcgcctacgacgaccagggt
gcactccggtatgtagggcacgtcgggaccggtttcactcaggctgggcgccggcagctc
ggtgagcaactggctgccctcgaacgtcccaccagcccgatcgtcgctgagtccgcggcc
gcggaacagcacggtgtagtgcggtgggtccacccgattgtggtggtcgacatagatatc
cgcgaatacgggcccggagggctccggcacccctcgtacaagggccaacgacccgatctc
gatccggaaggggtcaaatgggattcattgcagtag

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