Rahnella sikkimica: BV494_03040
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Entry
BV494_03040 CDS
T05331
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
rox
Rahnella sikkimica
Pathway
rox03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
BV494_03040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rox03400
]
BV494_03040
Enzymes [BR:
rox01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
BV494_03040
DNA repair and recombination proteins [BR:
rox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
BV494_03040
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BV494_03040
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BV494_03040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AVF33972
UniProt:
A0A2L1UM15
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All DBs
Position
complement(688762..690189)
Genome browser
AA seq
475 aa
AA seq
DB search
MSDKPQKTFYFHDYETFGKNPALDRPAQFAGVRTDEDFTIIEEPLVIYCRPSDDYLPEPE
AVMITGITPQIALERGVIEAEFTAQIHKAFSVPGTCIVGYNNIRFDDEVSRNILYRNFYD
PYAYSWQNGNSRWDLLDVMRACYALRPEGINWPENDDGFPSFRLEHLTKANGIEHENAHD
AMADVYATIAMAKLVKQAQPRLFSFLLEHRSKHKLNTLIDIPAMAPLVHVSGMFGAARGN
TAWVAPLAWHPENKNAVIMCDLAGDMSTLLDLDPDQMRERLYSRRDSLQAGESPLPIKLV
HVNKCPVLAPAKTLLPENAERLGIDRQRCLENLQILRQNPQVRGKVVTMYAEAEPFTASE
DVDARLYDGFFSDADRAAMRIILETRPENLPALDLTFNDSRIEPLLFRFRARNYPATLTD
AEQKRWMEHRQTKLTDERVQAYILELESLYNLYEGDAEKIALLGALFEYGKKLVS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaagccgcaaaaaaccttctactttcacgattacgagacattcggtaaaaat
ccggcgctggatcgcccggcgcagtttgccggggtgagaaccgacgaagatttcactatc
atcgaagaaccgttagtgatttattgccgcccttctgatgattacctgccggaaccggaa
gcggtgatgatcaccggtattacacctcaaattgcgctggaacgcggcgtgatcgaagcc
gagtttaccgcgcagatccataaagcatttagcgtgccgggcacctgcattgtcggttac
aacaatatccgtttcgacgacgaagtcagccgcaatatcctttatcgcaacttttacgac
ccttacgcctacagctggcaaaacggcaattcccgctgggatttgctggatgtgatgcgc
gcctgttacgccctgcgcccggaaggcattaactggccggaaaacgacgacggtttcccg
agtttccgccttgaacatctgaccaaagccaacggcatcgaacatgaaaatgcccacgac
gcgatggccgacgtttacgccacgattgccatggcaaaattggtgaagcaggcacaaccg
cgcctgttcagtttccttctcgaacaccgcagcaagcacaaactgaatacgctgattgat
attccggcgatggcaccgctggtccatgtctccggcatgttcggcgcggcgcgcggcaat
accgcgtgggtcgcgccgctggcgtggcatcctgaaaataagaacgcggtgatcatgtgc
gatctggcgggcgatatgtccacgctgttggatctcgacccggatcagatgcgcgagcgt
ttgtacagccgccgcgacagtttgcaggccggggaatctccgctgccgatcaagctggtt
cacgtcaataaatgtccggtgctggcaccggcaaaaacgttgttaccggaaaacgccgag
cgtctgggcattgaccgccagcgttgtctggagaatctccagatattgcggcagaacccg
caggtgcgcggaaaagtggtgacgatgtatgccgaagccgagccgtttaccgcgtccgag
gatgtcgatgcccgcctgtacgacggtttcttcagcgacgccgatcgcgccgcaatgcgg
attatcctggagacacgcccggagaatcttccggcgctggatctgacgtttaatgattca
cgcatcgaaccgctgttgttccggttcagagcccggaattatcctgcgacgctgactgac
gccgagcaaaagcgctggatggagcatcgacagacgaagctcaccgatgagcgtgttcag
gcgtacattttagagcttgaatcgctctataacttgtatgaaggggatgcggagaagatc
gcgttgctcggggcgctgtttgaatacgggaagaaattggtttcctga
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