Rhodopseudomonas palustris BisB18: RPC_0876
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Entry
RPC_0876 CDS
T00336
Name
(GenBank) DEAD/DEAH box helicase-like
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rpc
Rhodopseudomonas palustris BisB18
Pathway
rpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPC_0876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpc03019
]
RPC_0876
03009 Ribosome biogenesis [BR:
rpc03009
]
RPC_0876
Enzymes [BR:
rpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RPC_0876
Messenger RNA biogenesis [BR:
rpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RPC_0876
Ribosome biogenesis [BR:
rpc03009
]
Prokaryotic type
rRNA helicases
RPC_0876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABD86446
UniProt:
Q21AZ0
LinkDB
All DBs
Position
965338..967317
Genome browser
AA seq
659 aa
AA seq
DB search
MTFLTTSPPLARALAERNYNDPTPVQTAVLADQAAGRDLLVSAQTGSGKTVAYGLAIAKN
LLGDAERFEQAAAPLALIVAPTRELALQVHRELAWLYAYADARVVSCVGGMDPRQEQREL
ARGAHIVVGTPGRLCDHLRRGRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPPTRR
TLLFSATLPRGIVALAKQYQQQAFRVEVANGEGGHADIEYQAIRIAPGDVEHAVVNVLRF
HESPSTIVFCNTRNAVKHLQTALLERGFSVVALSGELTQNERTMALQSLRDGRARVCVAT
DVAARGIDLPNLALVIHADLPNDAEVMQHRSGRTGRAGKKGVSVLLVPPARRRRAELLLN
LAGIDAVWGTAPSADEIRKLDQERMFQDALFAEEPSAEDLVLAQALLAERSPEYIAAALA
RLYRARLPSPEDILDPGERGARSREPRATTRGDSRPRAEDRDYSPKARPGKASTRHAMEG
GVWFRAAIGRKKNAEARWLLPMICRRGGIDKQDIGAIRIHDTTTEFEISGAAAESFAAMI
RRPDKEDNIRIEAMGDAPAAQQAPDRRPPAGKPYERKPSSDKSYDRNHAGDGAPRDASFK
TKKSYDKPGYDKPAYDKPAYDPLANDKPMYAEVSPSGGSFELKPAFDKKPKKPKKKFRE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
gtgacattcttgaccactagcccgccgctcgcccgagccctggcggaacgtaattacaat
gacccgacaccggtgcagaccgcggtgctcgccgaccaggccgccgggcgcgaccttctg
gtgtcggcgcagaccggctcgggcaagaccgtcgcctatgggctggcgatcgccaagaat
ctgctcggcgacgccgagcgcttcgaacaggccgcggcgcccttggcgctgatcgtcgcg
ccgacccgcgaactggcgctgcaggtgcatcgcgaactggcgtggctgtatgcctacgcc
gacgcccgcgtggtgtcctgcgtcggcggcatggacccgcggcaggagcagcgcgagctg
gcccgcggcgcccatatcgtggtcggcacgccgggacggctgtgcgaccatctgcggcgc
ggccggctcgacgtctcgcaattgaaggccgtggtgctcgacgaggccgacgagatgctc
gatctcgggtttcgcgaggacatggagttcatcctcaagaccacgccgccgacccgccgc
acgctgctgttctcggcgacgctgccgcgcggcatcgtcgccttggccaagcagtatcag
cagcaggcgttccgcgtcgaagttgcaaacggtgagggcggccacgccgacatcgaatat
caggcgatccgcatcgcgcccggcgacgtcgagcacgccgtggtcaacgtgctgcgcttc
catgaatcgcccagcaccatcgtgttctgcaacacccgcaacgcggtgaagcatctgcag
accgcgctgttggagcgcggcttctcggtggtcgcgctgtccggcgaactgacccagaac
gagcgcaccatggcgctgcagtcgctgcgcgacggccgcgcccgggtctgcgtcgccacc
gacgtcgcggcgcgcggcatcgatctgccgaacctggcgctggtgatccacgccgatctg
ccgaacgacgccgaggtgatgcagcatcgctccggccgcaccggccgcgccggcaagaag
ggcgtcagcgttctcttggtgccgccggcgcgccgccgccgcgctgaattgcttttgaat
ctcgccggcatcgacgcggtgtggggcacagcacccagcgccgacgagatccgcaagctc
gatcaggaacgcatgttccaggacgcgctgttcgccgaggagccctcggccgaggatctg
gtgctggcgcaggcgctgctcgccgagcgctcgccggaatatatcgccgcggctttggcg
cggctgtatcgcgcgcggctgccgtcgccggaagacattttggatcccggcgaacgcggc
gcccgctcgcgcgagccgcgcgcgacgacgcggggggattcccggccgcgcgccgaggac
cgcgactacagcccgaaagcgcgacccggcaaagcctcgacgcgtcatgccatggaaggc
ggcgtttggtttcgcgccgcgatcggccgcaagaagaacgccgaagcgcgctggctgctg
ccgatgatctgccgccgcggcggcatcgacaagcaggacatcggcgcgatccggattcac
gacaccaccaccgagttcgagatttccggcgccgcggcggagtccttcgcggcgatgatc
cggcgtcccgacaaggaagacaatatccgcatcgaggcgatgggcgacgctcccgccgcg
cagcaggccccggaccggcggccgccggccggcaagccctatgagcgcaagccatccagc
gacaaatcgtatgaccgcaaccacgcgggcgatggcgccccgcgtgacgccagcttcaag
acgaaaaaatcctacgacaaaccgggctacgacaagcctgcgtatgacaagcccgcctat
gaccccctggcgaacgacaagccgatgtacgccgaagtctcgccgagcggcggcagcttc
gaactgaagccggcgttcgacaagaaaccgaaaaagccgaagaagaagtttcgcgaataa
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