Rhodopseudomonas palustris BisB5: RPD_1163
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Entry
RPD_1163 CDS
T00345
Name
(GenBank) nickel-dependent hydrogenase, large subunit
KO
K06281
hydrogenase large subunit [EC:
1.12.99.6
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd00633
Nitrotoluene degradation
rpd01120
Microbial metabolism in diverse environments
rpd02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00633 Nitrotoluene degradation
RPD_1163
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RPD_1163
Enzymes [BR:
rpd01000
]
1. Oxidoreductases
1.12 Acting on hydrogen as donor
1.12.99 With unknown physiological acceptors
1.12.99.6 hydrogenase (acceptor)
RPD_1163
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Gene cluster
GFIT
Motif
Pfam:
NiFeSe_Hases
Motif
Other DBs
NCBI-ProteinID:
ABE38401
UniProt:
Q13BY8
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All DBs
Position
1323584..1325377
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AA seq
597 aa
AA seq
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MSNVTTPNGFKLDNGGRRVVVDPVTRIEGHLRVEVNVDSANVIRNAVSTGTMWRGIEIIL
KGRDPRDAWAFTQRICGVCTGTHALTSVRAVENALDIKIPENANTIRNIMQLTLYVHDHI
VHFYHLHALDWVDVVSALSADPKATSALAQSISSWPLSSPGYFKDLQTRLKKFVESGQLG
PFKNGYWGHPAYKLPPEANLMAVAHYLEALDFQKEMVKIHTIYGGKNPHPNWLVGGVPCA
INLDGVGAVGAINMERLNLVSSIIDQMVTFTEQVYLPDLQAIASFYKDWTFGGGLSSKSV
LSYGDIPEHANDYSASSLKLPRGAIINGNLAEVLPVDLTDPSQVQEFVAHSWYKYPDETK
GLHPWDGVTEPNFKLGPNAKGTKTRIEALDEDAKYSWIKSPRWKGNAVEVGPLARYIVGY
AQNKPEFKEPTDKLLKDLGLPLPALFSTLGRTAARALEAQWAARQLRYFQDKLIASLKAG
DSATANVDKWKPESWAKDVKGVGFTEAPRGALGHWVKIKDGKIDNYQAVVPTTWNGSPRD
PKGGIGAFEASLLDTPMADPNQPLEILRTLHSFDPCLACSTHVMSEDGQEMTKVTVR
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgtcacgacacccaacggcttcaagctcgacaatggcggccgccgcgtcgtc
gtcgatccggtgacccggatcgagggccatctgcgcgtcgaggtcaatgtcgacagcgcc
aacgtcatccgcaacgcggtgtccaccggcacgatgtggcgcggcatcgagatcatcctg
aagggtcgcgacccgcgcgacgcctgggccttcacccagcggatctgcggcgtctgcacc
ggcacccacgcgctgacctcggtgcgcgcggtggagaacgctctcgacatcaagatcccg
gaaaacgccaacaccatccgcaacatcatgcagctcacgctgtatgtgcacgaccatatc
gtccacttctatcacctccacgcgctcgactgggtcgacgtggtgtcggcgctttcggcc
gatccgaaggcgacctcggcgctggcgcagagcatttcgtcgtggccgctgtcgagcccg
ggttacttcaaggatctgcagacgagactgaagaaattcgtcgagagcgggcagctcggc
ccgttcaagaacggctattggggccacccggcctataagctgccgccggaagccaatctg
atggcggtcgcgcattatctggaagcgctggatttccagaaggagatggtgaagatccac
accatctacggcggcaagaatccgcatccgaactggctggtcggcggcgtgccctgcgcg
atcaatctcgacggcgtcggcgcggtcggcgcgatcaacatggagcggctcaatctggtc
tcctcgatcatcgaccagatggtgacgttcaccgagcaggtctatctgcccgatctccag
gcgatcgcctcgttctacaaggactggaccttcggtggcgggctgtcctcgaaatcggtg
ttgagctacggcgatatccccgagcacgccaacgactattcggcgtcgtcactgaagctg
ccgcgcggcgcgatcatcaacggcaatctcgccgaagtcctcccggtcgatctcaccgat
ccgtcgcaggtgcaggagttcgtcgcgcattcctggtacaaatatcccgacgagaccaag
ggcctgcatccgtgggacggcgtcaccgaaccgaacttcaagctcggtcccaacgccaag
ggcaccaagacccggatcgaggcgctcgacgaggacgccaaatactcctggatcaaatcg
ccgcgctggaaaggcaacgcggtcgaggtcgggccgctggcgcgctacatcgtcggctat
gcccagaacaagccggagttcaaggagccgaccgacaagctgctgaaggatctcggcctg
ccgctaccggcgctgttctcgacgctcggccgcaccgcggcccgggcgttggaggcgcag
tgggcggcgcgtcagctgcgttacttccaggacaagctgatcgcatcgctgaaggccggc
gacagcgccaccgccaatgtcgacaaatggaagccggagagctgggcgaaggacgtcaag
ggcgtcggcttcaccgaggcgccgcgcggcgcgctcggccactgggtcaagatcaaggac
ggcaagatcgacaattaccaggcggtggtgccgaccacctggaacggcagcccgcgcgat
cccaagggcggcatcggcgcgttcgaggcgtcgctgctcgacaccccgatggccgatccg
aatcaaccgctggagattctgcggacgctgcattcgttcgatccctgcctcgcctgctcg
acgcatgtgatgagcgaggacggccaggaaatgaccaaggtcaccgtgcgctga
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