Rhodopseudomonas palustris BisA53: RPE_2890
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Entry
RPE_2890 CDS
T00400
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
rpe
Rhodopseudomonas palustris BisA53
Pathway
rpe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RPE_2890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpe03400
]
RPE_2890
DNA repair and recombination proteins [BR:
rpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPE_2890
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RPE_2890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
DnaJ_CXXCXGXG
RsgA_GTPase
nSTAND1
AAA_21
BCA_ABC_TP_C
APS_kinase
Motif
Other DBs
NCBI-ProteinID:
ABJ06827
UniProt:
Q07MK7
LinkDB
All DBs
Position
3239381..3242446
Genome browser
AA seq
1021 aa
AA seq
DB search
MDEVIKARRQPAGSPHRAITIRGAREHNLKNVDLEIPRDRLVVFTGLSGSGKSSLAFDTI
YAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIY
DYMRLLWARVGVPYSPATGLPIESQTVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYRKE
LADYLKKGFQRVKIDGAFHELAEAPVLDKKFPHDIDVVVDRIVVRPDIGQRLAESFETAL
KLAEGLAVVEFAEAAAALPSPPPGGGRSTAKRSGGGEAASTAPAPEGDAEKKKVAKIHDK
SGPERILFSEKFACPVSGFTLPEIEPRLFSFNNPYGACPACGGLGIEQHVDSDLVIPDKE
LSLKKGAIAPWAKSSSPYYLQTLTALGKFYKFTLDTKWKDLPKKTQNALLYGSGDDEIKF
SYEDGVRSYDTKKPFEGVITNIERRFRETESEWAREELGKYFSDIPCEACHGFRLKPEAL
CVKIGAKHIGEISELSVRAAGEWFATVPDQLTKQQNEIAVRILKEIRERLSFLLDVGLNY
LTLARASGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDL
GNTVIVVEHDEDAVRMADYVVDVGPGAGVHGGHIVAQGTPEEVMANPNSLTGKYLTGEKF
VPVPERRPPNHRRTLKVINARGNNLKNVSAEIPLGLFTCVTGVSGGGKSTLLIDTLYKAI
ARKLNNASEAAAPHDRIEGLEHIDKIIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLP
ESKARGYEPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDTCKGKRYNRETLEVL
FKGKSIADVLDMTVEEAADFFKAVPRVRETFKTLHRVGLDYIHVGQQATTLSGGEAQRVK
LAKELSKRATGRTLYILDEPTTGLHFHDVAKLLEVLHELVAQGNTVVVIEHNLEVIKTAD
WVIDLGPEGGDGGGEIVAWGPPEDIVKAPRSYTGKFLKAVLERKHPAGATARKRKADEAA
E
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagtgatcaaggcccgacgccagccggccggctccccgcaccgcgccattacc
attcgcggcgcccgcgagcacaatctgaagaatgtcgacctggaaatcccgcgcgaccgg
ctggtggtgttcaccggcctgtccggctcgggcaaatcctcgctcgcgttcgacaccatc
tatgccgagggccagcgccgctacgtcgaatcgctgtcggcctatgcccggcaatttctg
gagatgatgcagaagcccgacgtcgaccagatcgacgggctgtcgccggcgatctcgatc
gagcaaaaaaccacctcgaaaaatccgcgctccacggtcggcaccgtcaccgagatctac
gactacatgcggctgttatgggcccgcgtcggcgtgccctactcgcccgccaccggcctg
ccgatcgagagccagaccgtgtcgcagatggtcgaccgcgtgctggcgctgcccgagggc
acgcggctctatctgctggcgccggtggtgcgcggccgcaagggcgagtaccgcaaggaa
ttggccgactatctcaagaagggttttcagcgcgtcaagatcgacggcgcgttccatgag
ctggccgaagccccggtgctggacaagaaattcccgcacgacatcgacgtcgtggtcgac
cgcatcgtggtgcgccccgatatcggccagcgcctggccgagagttttgagaccgcgcta
aagctggccgaggggctggcggtggtggagttcgccgaggcggcggcggcgcttccttca
cctccccctggaggggggaggtcgaccgcgaagcggtcgggagggggtgaagccgcgagc
accgcccctgcccccgaaggtgacgctgaaaagaaaaaagtcgccaagattcacgacaaa
tccggtcccgagcgcatcctgttctcggaaaaattcgcctgcccggtgtccggcttcacg
cttcccgaaatcgagccgcggctgttttccttcaacaacccctatggcgcctgcccggcc
tgcggcgggctcggcatcgagcagcatgtcgattccgatctggtgatcccggacaaggaa
ctgtcgctgaaaaagggcgcgatcgcgccgtgggcgaagtcgtcgtcgccgtattatctg
cagacgctgaccgcgctcggcaaattctacaaattcacgctcgataccaagtggaaggat
ctgccgaagaagacccagaatgcgctgttgtacggctccggcgacgacgagatcaaattc
tcctatgaagacggcgtgcgctcctacgacaccaaaaaaccgttcgagggcgtgatcacc
aatatcgaacgccgctttcgcgagaccgagagcgaatgggcgcgcgaggagctgggcaag
tatttttccgacatcccctgcgaggcctgccacggctttcggctcaaaccggaagcgcta
tgcgttaaaatcggcgcaaaacatatcggcgagatttccgaattgtcggtgcgcgccgcc
ggcgaatggtttgcgacggtgcccgatcagctcaccaagcagcagaacgagatcgcggtc
cgtatcctcaaggagatccgcgagcggctctccttcctgctcgacgttggcctcaactat
ctcacgctagcgcgcgcctcgggcacgctgtcgggcggcgaaagccagcggattcggctg
gcctcgcagatcggctcggggctgaccggcgtgctctatgtgctggacgagccctcgatc
ggcctgcaccagcgcgacaatgcgcggctcctggacacgttgaagcggctgcgcgatctc
ggcaacaccgtgatcgtggtcgagcatgacgaggacgcggtgcggatggccgactatgtg
gtcgatgtcggccccggcgccggcgtccatggcggccacatcgtggcgcagggcacgccc
gaagaagtgatggccaatccgaattcgctgaccggaaaatatctcaccggcgagaaattc
gtccccgtgccggagcggcggccgccgaaccatcgccgcacgctaaaggtgatcaacgcc
cgcggcaacaatctgaaaaacgtctcggcggaaatcccgctcggcctgttcacctgcgtc
accggcgtgtcgggcggcggcaagtcgacgctgctgatcgacacgctgtacaaagccatc
gcgcgcaaactcaacaacgcctccgaggccgcagccccgcacgaccgcatcgaggggctg
gagcatatcgacaagatcatcgacatcgaccagtcgccgatcggccgcaccccgcgcagc
aatcccgcgacctacaccggcgccttcaccccgatccgcgaatggtttgccggcctgccg
gaatccaaggcgcgcggctacgagcccggccgcttcagtttcaacgtcaagggcggccgc
tgcgaggcctgccagggcgacggcgtcatcaagatcgagatgcactttttgcccgacgtc
tacgtcacctgcgacacctgcaagggcaagcgctacaaccgcgaaacgctggaagtgctg
ttcaagggcaagtcgatcgccgacgtgttggacatgacggtggaagaagccgccgacttc
ttcaaggcggtgccgcgcgtccgcgaaacttttaagaccctgcaccgcgtcggcctcgac
tacatccacgtcggccagcaggccaccacgctcagcggcggcgaagcgcaacgcgtcaag
ctcgccaaggaactatccaagcgcgccaccggccgcacgctctacatcctggacgagccg
accaccggcctgcatttccacgacgtcgccaaacttttggaagtgctgcacgagctggtg
gcgcagggcaacacggtcgtggtgatcgaacacaatctcgaagtcatcaagaccgccgac
tgggtgatcgacttaggccccgaaggcggcgacggcggtggcgaaatcgtcgcctggggc
ccgccggaggatatcgtcaaggcaccacggagctacacggggaagtttttgaaggcggtg
ctggaaaggaagcatccggccggggcgacggcgaggaagcggaaggcggacgaggcggcg
gagtga
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