KEGG   Rhizobium phaseoli: AMC79_CH00655Help
Entry
AMC79_CH00655     CDS       T04590                                 

Definition
(GenBank) ATP-dependent DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rpha  Rhizobium phaseoli
Pathway
rpha03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rpha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AMC79_CH00655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpha03400]
    AMC79_CH00655
Enzymes [BR:rpha01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AMC79_CH00655
DNA repair and recombination proteins [BR:rpha03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AMC79_CH00655
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ANL96492
LinkDB All DBs
Position
complement(666566..669076)
Genome map
AA seq 836 aa AA seqDB search
MALETYQAKRNFKLTPEPRGQKGRGTGNSFVIQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSLNPEDKRLAVHVEDHPLSYGDFEGIIPQGQYGGGTVIVWDRGTWTPVGDADKAYRKGH
LEFELDGEKLKGRWHLVRMHGRPGEVRENWLLIKGDDAEARHDGDILEERPESAKTGRQL
EEVAENPDATWKSRSGNGKAVAAKTPAQKAKPSGSGERQWPKGARKGAMPDFIEPVLAKL
KPKPPAGDRWIHEIKFDGYRLQVRMEDGKVRMLTRSGLDWTAKFGKDVLDAFAALPVQSA
VIDGEIVVESDSGASDFSALQRDLSEGRNDRFVFYAFDLLHLHGHNLLDARLIDRKHLLE
SLLPADNDKLRYSAHFNERGGLVLDHACRLSLEGVISKLRDSKYTSGRKGDWIKSKCSHR
QEFVIGGYVPSTSMKNAIGSLAMGYYRDGELKHVGRVGTGYTVATAQMLYEKLSRMTQNE
NSFDDKLTAEERRGLIYVKPQLVGEVEFRAWSADGNLRHAAFRGLREDKLAKEVTRETEQ
TAARPLPKAAVTLTHPDRIYWPDEGVTKEGLANYYAQVWRFMAPYVVNRPLALLRLPDGI
NGRQRFFQKHAWKGMNPHIEEIIDPKDKQGEKLLRITDFDGVVALVQSAVLEIHPWGTTT
DNWEKPDMITMDLDPGEAVAWEDVIAAAYELKARLEAEDLAAFVKTSGGKGLHVVTPLTP
KASWVEVKAFAKWLADSMSADDPDRYLATATKAKRKGRIFIDYLRNGRGNTAVAAYSTRA
RPGAAVSMPLEWSELTADIGPAYFTVDNTPTRLDALPGDPWDGFFAAAKPLEKKKR
NT seq 2511 nt NT seq  +upstreamnt  +downstreamnt
atggctctcgagacctatcaggcgaagcgcaatttcaaactcacccccgagccgcgcggg
cagaagggccgcggcaccggcaacagtttcgtcatccagaagcatgatgcgacaaggctg
cattatgatttccggctcgagatggatggggtgctgaagagctgggcggtgacgaagggg
ccgagcctcaacccggaggacaagcgcctggctgtgcatgtcgaagaccacccgctctcc
tatggcgatttcgaaggcatcatcccgcaagggcagtatggcggcggcaccgtcatcgtc
tgggaccgcggcacctggacgccggtcggcgacgctgacaaggcctaccggaaaggccat
ctggagttcgagctcgacggcgagaagctgaagggacgctggcacctcgtgcgcatgcac
ggccggcccggcgaggtgcgcgagaactggctgctgatcaagggggatgatgccgaggcg
cgccatgacggcgacattctcgaggaacggccggaatcggccaagacgggccggcagctc
gaagaggtggcggaaaatcccgatgcgacctggaagtccagatccggaaacggcaaggcg
gttgccgccaagacgccggcacaaaaggcgaagccgtcgggatccggcgaacgccaatgg
cctaaaggcgcgcgcaagggcgcaatgcccgacttcatcgaaccggtgcttgccaagctg
aaaccgaagccgccggcgggcgatcgctggatccacgaaatcaagttcgacggctatcgg
ctacaggtcaggatggaggacggcaaggtccgtatgttgacccgcagcggtctcgactgg
acagcaaaattcggcaaggacgtgctcgacgcctttgccgccctgccggtgcagtcggca
gtgatcgatggcgaaattgtcgtcgagagcgatagcggcgcctcggatttctcagcgctc
cagcgcgatctgagcgagggccgcaacgaccgcttcgttttctatgctttcgatctcctt
catctccacggccacaacctgcttgatgcaaggctcatcgatcgcaagcatctgctggaa
agcctgctgcccgccgataatgacaagctgcgctacagcgcgcatttcaacgaacgcggc
ggcctggtgctcgatcatgcctgccggctcagcctcgaaggcgtgatctccaagctgcgc
gacagcaaatacacctcgggacgcaagggcgattggatcaaatcgaagtgctcgcaccgg
caggaattcgtcatcggcggctacgtgccatcgacatcgatgaagaatgcgatcggctcg
ctggcgatgggctattaccgagatggcgagctcaagcatgtcgggcgggtcggcaccggg
tatacggtggccaccgcgcagatgctttatgagaagctgtcgcggatgacgcagaacgag
aactccttcgacgacaagctcaccgccgaggagaggcgtgggctgatctatgtcaagccg
cagctggtcggcgaagtcgagttccgcgcctggtcggccgacggaaatctgcgccatgca
gccttccgcggactgcgcgaggacaagctcgccaaagaggtgacgcgcgagacggaacag
accgcagcccgccccctgccgaaagccgctgtgacgctcactcaccccgaccgtatctac
tggccggacgagggtgttaccaaggaagggctggcgaactattatgcgcaggtctggcgc
ttcatggcgccctatgtcgtcaaccgccctttggcgctcttgcgtctgccggatggaatc
aacggtcgtcagcggttttttcaaaagcacgcctggaaagggatgaaccctcatatcgag
gaaatcatcgatccgaaggacaagcagggagagaagctgctgcggataaccgatttcgac
ggtgtcgtggcgctggtgcaatcggctgtgcttgaaatccacccatggggcacgacgacc
gacaattgggaaaagcccgacatgatcaccatggacctcgatcccggcgaggcggtggcg
tgggaagatgtgatagccgccgcttacgaattgaaggcgcggctggaggccgaagacctc
gccgccttcgtcaagacgtcaggcggcaaggggctgcatgtggtgacgccgctcacaccg
aaagccagctgggtcgaggtgaaggctttcgccaaatggctggccgacagcatgtcggcc
gacgaccccgaccgttatctcgccacggcgactaaggccaagcgcaaagggcggatcttc
atcgattatctgcgcaacggccgcggcaacacggcggttgcagcctattcgacacgcgca
aggccgggtgcggcggtttccatgccgctggaatggagcgaactgaccgccgacatcggg
ccggcctattttaccgtcgacaatacgccgacccggctcgacgccttgcccggagatccc
tgggacggatttttcgcggcggcgaaaccgttggaaaagaagaaaagatag

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