Rhizobium phaseoli: AMC79_CH02998
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Entry
AMC79_CH02998 CDS
T04590
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpha
Rhizobium phaseoli
Pathway
rpha03030
DNA replication
rpha03410
Base excision repair
rpha03420
Nucleotide excision repair
rpha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMC79_CH02998 (ligA)
03410 Base excision repair
AMC79_CH02998 (ligA)
03420 Nucleotide excision repair
AMC79_CH02998 (ligA)
03430 Mismatch repair
AMC79_CH02998 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpha03032
]
AMC79_CH02998 (ligA)
03400 DNA repair and recombination proteins [BR:
rpha03400
]
AMC79_CH02998 (ligA)
Enzymes [BR:
rpha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMC79_CH02998 (ligA)
DNA replication proteins [BR:
rpha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMC79_CH02998 (ligA)
DNA repair and recombination proteins [BR:
rpha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMC79_CH02998 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMC79_CH02998 (ligA)
MMR (mismatch excision repair)
DNA ligase
AMC79_CH02998 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMC79_CH02998 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
RNA_ligase
FdhE
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
ANL98772
LinkDB
All DBs
Position
complement(3029727..3031883)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVR
FPELIREDSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMAEMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVV
YKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITV
GGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRL
AEAKPYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFENEDPSLQIRTAPEIFTLEKRQQNSLTKLENIDGFGKVSVGKLYAAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNAIE
GIGEVVARAMVEFYKEPRNVEVIGSLLVEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALISG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaggttccgccgtcgacacattgacgatcgaagaggctgccgccgagctt
gagcggctggccaaggagatcgcgcatcacgatgcgctctatcacggcaaggaccagccg
gagatatcggatgccgattacgacgcgctgaagcgccggaatgatgcgctggaggtgcgg
tttcccgagctgatccgcgaggacagcccgtcgcggcacgtcggcgccgctccctccgtc
accttttcgccggtcgtccatgcgcggccgatgctgtcgctcgacaacacgttttcgcag
gaggacgtgcaggatttcgtcgccggcgtctatcgcttcctcggccgcctgccggaccag
tcgatcgcctttaccgccgaaccgaagatcgacggcctgtcgatgtcgatccgttacgaa
aacggcaggctggttacggccgccacgcgtggcgacggcacgacgggggaaaacgtcacc
gccaatatccgtaccatcgccgaaattccgaatgagttgccgaagggcgttcctgccgtg
gtggagattcgcggcgaggtctatatggccaagagcgatttcctggcgctgaaccggcag
atggaggcggagggcaagcagacctacgtcaatccacgcaataccgccgccggatcgttg
cgccagctcgacgccaaggtgacggccagccgcaagctgaaattcttcgcctatgcctgg
ggcgagatggcggagatgcctgccgacacgcagttcggcatggtgcagaccttcaaggac
tggggttttccggtcaatccgctgatgaagcggctgaattcggtcgccgacatcctggcg
cattacgacgagatcggcctcgagcgcccggatctcgattatgacatcgacggcgtcgtc
tataaggtcgacagcctggaattacagcagcgcctcggcttccgctcgcgttcgccgcgc
tgggcgacggcgcacaagtttcccgcggaacaggccttcaccgaggtcgagaagatcgag
atccaggtcggccgcaccggcgcgctgacgccggtggcgcggctgaagccgatcacggtc
ggcggtgtggtcgtcaccaatgcgacgctgcacaacgaggattacatcaagggcatcggc
aatagcggtgagcgtatccggccggaggaacacgatatccgcgagggcgatacggtcatc
gtccagcgcgccggcgacgtcattccgcagatcctcgacgtggtgatggagaagcggctg
gccgaggcaaagccctacgaattcccgaagacctgcccggtctgcggctcgcatgccgtg
cgcgaggtcaacgagaagacaggcaagatggattcggtgcgccgctgcaccggcggcttc
atctgccgggcgcaggcgacggagcatctgaagcacttcgtctcgcgcaacgccttcgat
atcgaggggctcggctccaagcagatcgacttcttcttcgaaaacgaggatccgtcgctg
cagatccgcaccgcgccggagatcttcaccctggagaagcggcagcagaattcgctgacc
aagctggagaatatcgacggcttcggcaaggtcagtgtcggcaagctctatgcggcgatc
aacgaacggcgcagcattgcgctccatcgcttcatctatgcgctcggcatccgtcatgtc
ggcgaaaccacggcgaagctgctggcgcgctcctacggcacctacgaagcctttgcgacg
gcgatgaaggaagcagcaccgctgtccggcgacgcctggaacgatctcaacgccatcgag
ggcatcggcgaggtcgtggcgcgtgccatggtcgaattctacaaggagccgcgcaatgtc
gaggtgatcggcagcctgctcgtcgaagtaacgcccgcggaggctgaacagccggtgacg
gcaggaagcccggtcgccggcaagaccgtggtcttcaccggctcgctggaaaaattcact
cgcgacgaggcgaaggcgagggcggaaagcctcggcgccaaggtggcgggctcggtgtcg
aagaagaccgacatcgtcgtcgccggtcctggcgccggctccaagctcgacaaggcgcgc
gagctcggcgtgcagaccatggacgaggatgagtggctggcgctgatcagcgggtga
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