KEGG   Rhizobium phaseoli: AMC79_CH02998
Entry
AMC79_CH02998     CDS       T04590                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rpha  Rhizobium phaseoli
Pathway
rpha03030  DNA replication
rpha03410  Base excision repair
rpha03420  Nucleotide excision repair
rpha03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rpha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AMC79_CH02998 (ligA)
   03410 Base excision repair
    AMC79_CH02998 (ligA)
   03420 Nucleotide excision repair
    AMC79_CH02998 (ligA)
   03430 Mismatch repair
    AMC79_CH02998 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rpha03032]
    AMC79_CH02998 (ligA)
   03400 DNA repair and recombination proteins [BR:rpha03400]
    AMC79_CH02998 (ligA)
Enzymes [BR:rpha01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AMC79_CH02998 (ligA)
DNA replication proteins [BR:rpha03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AMC79_CH02998 (ligA)
DNA repair and recombination proteins [BR:rpha03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AMC79_CH02998 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AMC79_CH02998 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     AMC79_CH02998 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AMC79_CH02998 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT RNA_ligase FdhE Lar_restr_allev
Other DBs
NCBI-ProteinID: ANL98772
LinkDB
Position
complement(3029727..3031883)
AA seq 718 aa
MSTEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVR
FPELIREDSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMAEMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVV
YKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITV
GGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRL
AEAKPYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFENEDPSLQIRTAPEIFTLEKRQQNSLTKLENIDGFGKVSVGKLYAAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNAIE
GIGEVVARAMVEFYKEPRNVEVIGSLLVEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALISG
NT seq 2157 nt   +upstreamnt  +downstreamnt
atgtccaccgaaggttccgccgtcgacacattgacgatcgaagaggctgccgccgagctt
gagcggctggccaaggagatcgcgcatcacgatgcgctctatcacggcaaggaccagccg
gagatatcggatgccgattacgacgcgctgaagcgccggaatgatgcgctggaggtgcgg
tttcccgagctgatccgcgaggacagcccgtcgcggcacgtcggcgccgctccctccgtc
accttttcgccggtcgtccatgcgcggccgatgctgtcgctcgacaacacgttttcgcag
gaggacgtgcaggatttcgtcgccggcgtctatcgcttcctcggccgcctgccggaccag
tcgatcgcctttaccgccgaaccgaagatcgacggcctgtcgatgtcgatccgttacgaa
aacggcaggctggttacggccgccacgcgtggcgacggcacgacgggggaaaacgtcacc
gccaatatccgtaccatcgccgaaattccgaatgagttgccgaagggcgttcctgccgtg
gtggagattcgcggcgaggtctatatggccaagagcgatttcctggcgctgaaccggcag
atggaggcggagggcaagcagacctacgtcaatccacgcaataccgccgccggatcgttg
cgccagctcgacgccaaggtgacggccagccgcaagctgaaattcttcgcctatgcctgg
ggcgagatggcggagatgcctgccgacacgcagttcggcatggtgcagaccttcaaggac
tggggttttccggtcaatccgctgatgaagcggctgaattcggtcgccgacatcctggcg
cattacgacgagatcggcctcgagcgcccggatctcgattatgacatcgacggcgtcgtc
tataaggtcgacagcctggaattacagcagcgcctcggcttccgctcgcgttcgccgcgc
tgggcgacggcgcacaagtttcccgcggaacaggccttcaccgaggtcgagaagatcgag
atccaggtcggccgcaccggcgcgctgacgccggtggcgcggctgaagccgatcacggtc
ggcggtgtggtcgtcaccaatgcgacgctgcacaacgaggattacatcaagggcatcggc
aatagcggtgagcgtatccggccggaggaacacgatatccgcgagggcgatacggtcatc
gtccagcgcgccggcgacgtcattccgcagatcctcgacgtggtgatggagaagcggctg
gccgaggcaaagccctacgaattcccgaagacctgcccggtctgcggctcgcatgccgtg
cgcgaggtcaacgagaagacaggcaagatggattcggtgcgccgctgcaccggcggcttc
atctgccgggcgcaggcgacggagcatctgaagcacttcgtctcgcgcaacgccttcgat
atcgaggggctcggctccaagcagatcgacttcttcttcgaaaacgaggatccgtcgctg
cagatccgcaccgcgccggagatcttcaccctggagaagcggcagcagaattcgctgacc
aagctggagaatatcgacggcttcggcaaggtcagtgtcggcaagctctatgcggcgatc
aacgaacggcgcagcattgcgctccatcgcttcatctatgcgctcggcatccgtcatgtc
ggcgaaaccacggcgaagctgctggcgcgctcctacggcacctacgaagcctttgcgacg
gcgatgaaggaagcagcaccgctgtccggcgacgcctggaacgatctcaacgccatcgag
ggcatcggcgaggtcgtggcgcgtgccatggtcgaattctacaaggagccgcgcaatgtc
gaggtgatcggcagcctgctcgtcgaagtaacgcccgcggaggctgaacagccggtgacg
gcaggaagcccggtcgccggcaagaccgtggtcttcaccggctcgctggaaaaattcact
cgcgacgaggcgaaggcgagggcggaaagcctcggcgccaaggtggcgggctcggtgtcg
aagaagaccgacatcgtcgtcgccggtcctggcgccggctccaagctcgacaaggcgcgc
gagctcggcgtgcagaccatggacgaggatgagtggctggcgctgatcagcgggtga

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