KEGG   Rhizobium phaseoli: AMC79_PB00200Help
Entry
AMC79_PB00200     CDS       T04590                                 

Definition
(GenBank) ATP-dependent DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rpha  Rhizobium phaseoli
Pathway
rpha03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rpha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AMC79_PB00200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpha03400]
    AMC79_PB00200
Enzymes [BR:rpha01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AMC79_PB00200
DNA repair and recombination proteins [BR:rpha03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AMC79_PB00200
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M CTK3_C
Motif
Other DBs
NCBI-ProteinID: ANM00615
LinkDB All DBs
Position
pRphaN261b:complement(219840..222485)
Genome map
AA seq 881 aa AA seqDB search
MASDKLSSYRSKRDFQKTAEPSGERRIKKSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRASPE
QALLKGDFKFTLHGERLHGSFVLVRMRSDRERSKRTNWLLIKHHDEFSVEENGAAILEGN
ATSVASGRSMEMIAAGKGRKPKPFMVEGGKVEANAVWDSNHGLAADERREAKGGRRSSTA
TAVDLPSFIAPQLCEKRERPPGGDGWLHEIKFDGYRIQMRVLGGEATLKTRKGLDWTAKY
PEIAQAASALPDCILDGEICALDEHGAPDFAALQAALSEGKTGNLVYFAFDLLYDGGEDY
RLKPLIERKARLQELLTEADEGPRIRFVEHFTGGGDAVLRSACKLSLEGIVSKQADAAYQ
SGRTESWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVFSDDNFVYVGRVGTGYGAKKVET
LLPKLKALETAKSPFTGTGAPKKQADVVWVKPELVAEIEFEGWTADGLVRQAAFKGLRQD
KPAKEVEAERSRTSAKAEVAEPAPRAEPRSTRRRGQKADVMGVLISNPDKPLWPDANDGA
PVTKEELARYYEAVGDWMIDHLKGRPCSIIRAPDGMGGEQFFQRHAMPGQSNLLELVKVF
GDKKPYLQIDRIEGLAAVAQIAAVELHPWNCEPGQPEVPGRLVFDLDPGPDVAFSTVVAA
AREMRDRLQDLGLISFCKTTGGKGLHVVTPLAVNKRKPLSWPEAKAFAHNLCQQMARSNP
DLYLIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPKR
FTVRTVPALLSKSAAWKDYCEGQRPLEQAIKRLGRTGKHAA
NT seq 2646 nt NT seq  +upstreamnt  +downstreamnt
atggccagcgacaagctatcgagctatcgatcgaaacgcgattttcagaagaccgctgag
cccagcggtgagcggcgcatcaaaaagagcaaccgccgccgcttcgtcattcagaagcac
gatgcaacacggctgcactacgacctgcggctcgagctcgacggcgtgttcaagagctgg
gcagtcaccaagggcccatcgctcgatccgcacgataagcgcctggcggtcgaggtcgag
gaccatccactcgattatggcgatttcgaaggcacgattccgaaaggccagtatggcggc
ggcacggtcatgctgtgggatcgcggttattgggagccggagggacgggcgagccccgag
caagcccttctcaagggcgatttcaagttcacgcttcacggcgagcgcttgcacggaagc
ttcgtgctggtgcgcatgcgtagcgatcgcgagcgcagcaagcgtaccaactggctgttg
atcaagcaccatgacgagttctcggtggaggagaacggtgccgctatcctggagggcaac
gccacctcggtcgcttcgggccgcagcatggaaatgatcgcagccggcaaggggcgcaag
ccgaaacctttcatggttgaaggcggcaaggtcgaggccaacgccgtctgggacagcaat
cacggactggccgccgacgagcggcgggaggcgaaaggcggaaggcgcagcagcacggcg
acggcggttgatctgccgagtttcatcgcgccgcagctttgcgagaaacgggagcggccg
cctggcggggacggttggcttcatgagatcaaattcgatggatatcgcatccagatgcgg
gtgctcggcggcgaagcgacgttgaaaaccaggaaaggtctcgactggacggccaagtac
cccgaaatcgcccaggcggcgtcagcgcttccggattgtatcctcgatggcgagatctgc
gcgctcgacgagcatggtgcgccggacttcgccgcgctgcaggccgcactgtctgagggc
aagaccggcaatctcgtctacttcgccttcgatctgctctacgacggcggcgaggattat
cgtctgaagcccctcatcgagcgaaaggcgcggctgcaggaactcctcacggaggccgac
gaaggtcctcgcatccgcttcgtcgaacatttcaccggcggtggcgacgccgttctccgg
tcggcatgcaaactctcgctggaaggcatcgtgtcaaaacaggcagatgccgcttatcag
tccggtcgaacggaaagctgggcgaagtccaaatgccgtgccggacacgaggtggtcatc
ggcgcctatgccaagaccaacggcaagtttcgttcccttctggtcggcgttttcagcgac
gataactttgtttatgtcggccgtgtcgggaccggctacggcgccaagaaggtcgaaacg
ctgcttccgaaactgaaggcgctggagactgcgaagtcgccgttcactggaaccggcgct
ccgaagaagcaggctgacgtcgtctgggtgaagccagagcttgtcgcagagatcgaattc
gagggctggactgcggacggtcttgtccggcaggcagccttcaagggactgcgccaggat
aaaccggctaaggaggtcgaggcggaacgatcgcgaacatccgccaaagccgaggttgcg
gagccggctccgagggccgaaccgaggtcaacgcgccgcaggggtcagaaggccgatgtc
atgggcgtgctcatttccaatccggacaaaccattgtggccggatgccaatgatggcgcg
ccggtgacaaaggaagaactggcccgctattacgaggcggtcggcgactggatgatcgac
cacctgaagggcaggccctgctccatcatccgtgctccggatggaatgggtggcgagcag
tttttccagcgccatgcgatgccggggcaatccaacctgctcgaattggtcaaggtgttc
ggcgacaagaagccatatctgcagatcgatcgcatcgaaggccttgccgcggtcgcccag
atcgcggcggtcgagcttcatccgtggaactgcgaacccggtcaaccggaagtccctggt
cgtctggtattcgatctcgatcccgggcccgatgttgccttttccacggttgttgcggct
gcccgggaaatgcgcgaccggctgcaggacctcggattgatcagcttctgcaagacgacc
ggcggcaagggcctgcatgtggtgacgccacttgcagtcaacaagcgcaagccattgtcc
tggcctgaagcaaaggccttcgcgcacaacctctgccagcagatggcccggagcaacccc
gatctctacctgatcaaaatgaccaagagcctgcggggcggtcgcatttttcttgattac
ctgcgcaacgaccgcatggcgacagcggtggctccgctctcccctcgagcccgcccaggc
gccacggtgtcgatgcctttgacgtggacacaggtgaaatcagaccttgaccccaaaagg
tttacggttcggaccgtgcctgctttgttgtcgaagtcagccgcctggaaagattattgc
gaggggcagcgtccgctggagcaggccatcaagaggctcggccgcaccggcaagcatgcc
gcctga

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