KEGG   Ralstonia pickettii 12J: Rpic_0501Help
Entry
Rpic_0501         CDS       T00762                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rpi  Ralstonia pickettii 12J
Pathway
rpi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rpi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Rpic_0501
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpi03400]
    Rpic_0501
Enzymes [BR:rpi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Rpic_0501
DNA repair and recombination proteins [BR:rpi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Rpic_0501
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ACD25656
UniProt: B2UGG9
LinkDB All DBs
Position
1:complement(534186..536777)
Genome map
AA seq 863 aa AA seqDB search
MPRHLADYRSKRDFTQTQEPAGARRKADEQRDHGALHFVIQKHDATRLHYDFRLELDGTL
KSWAVPKGPSLDPADKRLAVHVEDHPLDYADFEGHIPEGQYGGGDVIVWDRGTWRPHGDP
RKAYRDGKLKFDLHGEKLHGAWALVRTHLHGTGRHPKEQWLLIKERDDQVRASSDYDVTQ
ALPASVITGENVGAKPKAKADGRKTQRADPAQVQPPAGAVPGTLPKTLEPQLATLVDAPP
RQGEWNYEVKFDGYRILARIDGNTVRLFSRNGRDWTAKLPRQARTLQALGLREAWLDGEV
VVMGERGVPDFQALQNAFETAHAEHIAYYLFDIPFCNGMDLRGVPLRERRALLERILDAA
PGNLDREAVLFSGTFHAAPEDLLSSACSMSLEGVIGKRADAPYRAGRSPAWIKLKCGQRQ
EFVIGGYSAPKGSRSGFGALLLGVYDDAGKLRYAGRVGTGFNETSLHALHHELTGLTVDT
PPFANPPTGSDARDVQWVKPERVAEIAFAEWTREGIVRQAVFQGLRDDKLARNIVREQAK
PPSAAARKETRAVNAAERKVRPGAERIADVDVTHPDRVIEKASGTTKADLARYYAGVAEW
MLPHLRNRPTSLVRAPDGIDGERFFQKHSAALKLQGITQLDPSLDPGHPSLLAINSAEAL
VGAVQMGTVEFHTWNALADRIEQPDRIVFDIDPDPALPFARVIEATQLMLAMLDELGLKA
FLKTSGGHGMHVVVLLTRREAAGWDTLKTFAQAVVQHMAATFPDRFVAKMGPQNRVGKIF
IDYLRNNRGASTVAAYSVRARTGLPVSVPIRHDELEGLQSSAQWTLRTLPERLAKLKGDP
WAAYAGTRQSVTADMRKRVGADD
NT seq 2592 nt NT seq  +upstreamnt  +downstreamnt
gtgccacgccatctcgccgactaccgcagcaagcgcgatttcacgcagacccaggaaccc
gccggcgcgcgccgcaaagccgacgagcagcgtgaccatggcgccctgcacttcgtgatc
cagaagcacgacgcaacgcgactgcactacgacttccggctggaactcgacggcacgctc
aagagctgggccgtccccaagggcccgagcctggaccccgccgacaagcgcctcgcggta
catgttgaagaccacccgctggactacgcggatttcgaaggccatatccccgaaggacaa
tacggcggcggcgacgtgatcgtgtgggaccgcgggacatggcgcccgcatggcgatccg
cgcaaggcctatcgcgacggcaagctcaaattcgacctccatggcgagaagctgcatggt
gcatgggcgctggtacgcacgcatttgcacggcacgggcagacatccgaaagaacagtgg
ctgctgatcaaggaacgcgacgaccaggtgcgcgcatcgagcgactacgacgtgacacag
gcgctgcccgccagcgtgatcaccggagagaacgtcggcgcaaaaccgaaggctaaggcc
gatggccgcaagacccagcgtgccgatccggcacaagtccagccgcccgccggtgccgtg
cccggcacgttgccgaaaacgctggagccgcagcttgccacgctcgtcgatgcgccgcca
aggcaaggcgagtggaattacgaagtgaagttcgacggctaccgcatcctggcgcgcatc
gacggcaacaccgtgcgcctgttcagccgcaacggccgcgactggacggccaagctgccg
cgtcaggcgcgcacgctgcaggcgctgggcctgcgcgaggcgtggctcgacggcgaagtc
gtggtgatgggcgagcgcggcgtgcccgacttccaggcgctgcagaacgccttcgaaacc
gcgcatgccgaacacattgcctactacctgttcgacatcccgttctgcaacggcatggac
ttgcgcggtgtgccgttgcgcgagcggcgggcgctgcttgagcgcattctcgatgccgcc
ccgggcaacctggaccgcgaagcggtgctcttctcagggacatttcacgcggcacccgaa
gacttgctgtcttccgcgtgcagcatgtcgctcgaaggggtgatcggcaagcgcgccgat
gcgccgtaccgggccggccgcagccctgcctggatcaagctcaaatgcgggcagcggcag
gaattcgtgatcggcgggtacagtgcgcccaagggtagccgcagcggcttcggtgccctg
ctgctcggcgtgtatgacgacgcgggcaagctgcgctatgcgggccgtgtcggcacgggc
ttcaacgagacgagtctgcacgctttgcaccacgagctgacgggtctgaccgtcgacacg
ccgcccttcgccaacccgcccaccggcagcgatgcgcgcgacgtgcaatgggtgaagccc
gaacgcgtggcggaaatcgcctttgccgaatggacgcgcgaaggcatcgtgcggcaagcc
gtgttccaaggtttgcgtgacgacaaactcgcgcgcaacatcgtgcgtgaacaagccaag
ccgcccagcgctgccgcacgcaaggagacccgcgccgtgaatgctgccgaacgcaaggtg
cgccccggtgccgaacgcatcgccgatgtggacgtcacgcatccagatcgcgtgatcgag
aaagccagtggcaccaccaaggcggacctggcgcgctattacgccggtgtggccgaatgg
atgctgccgcatcttcgcaaccgcccgacatcgctcgtacgcgcgcccgacggcatcgac
ggcgagcgcttcttccagaagcattccgccgcgctcaagctgcagggcatcacgcagctg
gacccatcgctcgacccggggcatccgtcgctgcttgcgatcaactcggccgaggccctg
gtcggcgcggtgcagatgggcacggtggagttccacacgtggaatgcgctggccgaccgc
atcgaacaacccgaccgcatcgtcttcgatatcgacccggacccggcgctgcctttcgcg
cgcgtgatcgaggccacgcagctcatgctggccatgcttgatgaactcggcctgaaggcc
ttcctgaaaaccagcggtgggcatggcatgcacgtggtggtgctgctcacgcgccgcgaa
gccgctggctgggacacgctcaaaacgttcgcgcaagccgtggtgcaacacatggccgcg
accttccctgaccgctttgtcgccaagatggggccgcagaaccgcgtgggaaaaatcttc
atcgactatctgcgcaacaaccgcggtgcgagcacggtggccgcctattcggtgcgcgcg
cggacggggttgccagtgtccgtgccgatccgccatgacgagctggaagggctgcagtcg
tctgcccagtggacgctgcgcacgctgcccgaacggctcgccaagctcaagggcgatcct
tgggccgcctatgccggtacgcgtcaatcggtcacggccgacatgcgcaaacgcgttggc
gccgatgactga

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