KEGG   Ralstonia pickettii DTP0602: N234_33275Help
Entry
N234_33275        CDS       T03172                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rpj  Ralstonia pickettii DTP0602
Pathway
rpj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rpj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    N234_33275 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpj03400]
    N234_33275 (ligD)
Enzymes [BR:rpj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     N234_33275 (ligD)
DNA repair and recombination proteins [BR:rpj03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     N234_33275 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-GeneID: 17106555
NCBI-ProteinID: AGW94928
UniProt: U3QXI0
LinkDB All DBs
Position
2:2640368..2643238
Genome map
AA seq 956 aa AA seqDB search
MAKTTRQDPGEGRTPAKRTGKRAGTAAAKAPRAAARKAAAKSPTRTPTKSATKSATKAAA
PARKRTAGTAPAALDKYRRMRDFGATPEPGAAAARARPAPRKRAGELSFVIQKHAARRLH
YDFRLELGGTLKSWAVPKGPSLDPADKRMAVHVEDHPMEYAGFEGVIPAGHYGAGTVIVW
DRGSWVPVGDAEAGYRAGKLKFELRGEKLHGHWTLVRMHGSRQKAQGEQDAWLLIKERDE
AAVPASEFDVVEAMPDSVLGGTERKAPAKRSPTTGKAKRAQNPDDAEAAPAGTSVKALKP
PHGAARAALPLALAPQLATLVENPPSASQAWRYEIKFDGYRLLARIDGKDVRLFTRQGHD
WTARLRALARDVGALGLPDGWLDGEIVVIGKHGETDFQALQNAFDTSRVEAIQYFAFDLP
YFAGHDLRKVPLVARRALLRRIFEHNTSARLRFSEDFEASPEEMLDAACRMKLEGVIGKR
ADSRYVSARSNTWIKLKCTLRQEFVVAGFTDPKGSREGIGSLLLGVHDSGGRLRYAGNVG
TGFDTRMLGVLRKQLDALRADDPPFDTVPAGVKGHWVRPNLVAEVSFGSWTREGRVRHAV
FHGLRSDKPASAVSVERPAEAAAKGKAAAKTVKETARADSTKTGTGAKAKSGAAAKRPTA
AGGKVAISNAGRVIDTASGLTKGDLVRYYERAAALMLPHLRGRPIAMVRAPSGVGGEQFF
QRHGDTLRVDGINVLDPGLWPGHPALLEIVSEQALVAAAQLNVVEFHTWNASKRSIDRPN
RIIFDLDPGEGVAWSHMQEAAALMKALLDELGLASFLKTSGGKGLHVVVPVTPRAGWDEV
KGFAHDVVRHVAATIPQRFVAKSGARNRVGKIFIDYLRNGVGATTAAAFSARARPGLGVS
IPVSWEELDALEGSAQWTVANVEPRLEALEADDPWADYAGTRQAITRAAARLGHVR
NT seq 2871 nt NT seq  +upstreamnt  +downstreamnt
atggccaagacgacgcggcaggatccaggtgaaggccgcaccccggcaaagcgcaccggc
aagcgcgcgggtactgccgccgccaaggcgccgcgtgcggctgcgcgcaaggcggcagcg
aagtccccaaccaggaccccgaccaagtccgctaccaagtccgctaccaaggcagcggcc
cccgcgcgcaagcgcaccgccggcacggcgcccgccgcgctcgacaaataccgtcgcatg
cgcgacttcggcgccacgcccgagcccggcgccgccgcggcgcgcgcccggcccgcgcca
cgcaagcgcgccggcgagctgtctttcgtgatccagaagcatgccgcgcggcgactgcac
tatgacttccgcctggaactgggcggcacgctgaagagctgggcggtgcccaagggcccc
agcctggaccccgccgacaagcgcatggccgtccatgtcgaagaccatccgatggagtac
gccggcttcgagggcgtgatccccgccggccactatggcgccggcacggtgatcgtctgg
gaccgcggcagctgggtgccggtgggcgacgccgaagccgggtatcgcgccggcaagctg
aagttcgagctgcgcggcgagaagctgcatgggcactggacgctggtgcgcatgcacggc
agccggcagaaggcgcagggcgaacaggacgcctggctgctgatcaaggaacgcgacgaa
gccgcggtgccggcgtcggagttcgatgtggtcgaggccatgcctgacagcgtgctgggt
ggcaccgaacgcaaggccccggcaaagcgctcccccaccacgggaaaggcaaagcgcgcg
cagaaccctgacgacgcggaggccgcaccggcaggcacctcagtgaaggccctgaagccc
ccgcacggggccgcgcgcgcggcactgcccctggcgctggcgccgcagctggccacgctg
gtggaaaaccccccgtccgcttcccaggcctggcgctacgagatcaagttcgacggctac
cggctgctggcgcgcatcgacggcaaggacgtgcgcctgttcacgcgccagggccatgac
tggaccgccaggttgcgcgcgctggcgcgcgacgtcggcgcgctgggactgcccgacggc
tggctcgacggcgaaatcgtggtgatcggcaagcatggcgagaccgacttccaggcgctg
cagaacgccttcgacacatcgcgggtggaggcgatccagtacttcgcgttcgacctgccg
tactttgccggccatgacctgcgcaaggtgccgctggtggcgcggcgcgcgctgctgcgg
cggatcttcgagcacaacacctcggcgcggctgcggttcagcgaggactttgaagcgagc
cccgaagagatgctcgatgccgcctgccgcatgaagctggaaggcgtgatcggcaagcgc
gcggattccagatatgtgagcgcgcgcagcaacacgtggatcaagctcaaatgcacgctg
cgccaggaattcgtggtggcgggcttcaccgaccccaagggcagccgcgaaggcatcggc
tcgttgctgctcggcgtacatgacagcggcgggcggctgcgctacgccggcaacgtcggc
accggcttcgacacgcgcatgctcggcgtgttgcgcaagcagctggacgcgctgcgcgcc
gatgacccgccgttcgacacggtacccgccggcgtcaagggccactgggtgcggccgaac
ctggtggccgaggtgtcgttcggcagctggacgcgcgaaggccgcgtgcgccatgccgtc
ttccatgggctgcgcagcgacaaacccgcgagcgcggtgtcggtggaacgcccggccgag
gctgccgcgaagggcaaggccgcggcaaagaccgtaaaggagactgccagggccgacagc
acgaagacaggaaccggagcaaaagcgaaatcaggcgcggcggcaaagcgccccaccgcc
gccggcggcaaggttgccatcagcaatgccgggcgcgtgatcgacaccgcctcgggcctg
accaaaggcgacctggtgcgctactacgagcgcgccgctgcactgatgctgccgcacctg
cgcgggcgcccgatcgcgatggtgcgcgcgccctcgggcgtgggcggcgagcagttcttc
cagcggcatggcgacacgctgcgcgtggacggcatcaacgtgctcgatcccgggctgtgg
ccggggcatccagcgctgctggaaatcgtctcggaacaggcgctggtcgcggccgcgcag
ctcaacgtggtggagttccatacctggaacgccagcaagcgcagcatcgaccggcccaac
cgcatcatcttcgacctggacccgggcgaaggcgtggcatggtcgcatatgcaggaggcc
gccgcgctgatgaaggcgctgctcgacgagctgggcctggccagcttcctgaagaccagc
ggcggcaagggcctgcatgtggtggtgccggtcacgccgcgcgcgggctgggacgaggtc
aagggctttgcccatgacgtggtgcgccacgtcgccgcgaccatcccgcagcgcttcgtt
gccaagagcggcgcgcgcaaccgcgtgggcaagattttcatcgattacctgcgcaatggt
gtcggcgccaccacggcagcggcgttttccgcacgcgcgcggccagggctgggcgtgtcg
attccggtgtcgtgggaagaactcgacgcgctggaaggctcggcgcaatggaccgtcgcc
aacgtcgagccaaggctggaagcgctggaagcggacgacccctgggcggactacgctggc
acgcggcaggccatcacgcgggccgcggcaaggctcggccacgtgcgctag

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