KEGG   Roseitalea porphyridii: E0E05_02710Help
Entry
E0E05_02710       CDS       T05862                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rpod  Roseitalea porphyridii
Pathway
rpod03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rpod00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    E0E05_02710 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpod03400]
    E0E05_02710 (ligD)
Enzymes [BR:rpod01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     E0E05_02710 (ligD)
DNA repair and recombination proteins [BR:rpod03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     E0E05_02710 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Motif
Other DBs
NCBI-ProteinID: QBK29602
LinkDB All DBs
Position
complement(580907..583429)
Genome map
AA seq 840 aa AA seqDB search
MAQKSDRLSDYAARRDFSVTREPSGEAIPKKRGKPVFVVQKHDATRLHFDFRLEWDGVLL
SWAVTKGPSDDPSVKRLAVRTEDHPLDYQDFEGTIPKDEYGGGTVMVWDKGWWAPHGDVE
EGLDKGKLGFDLHGARMSGAWALVRMRRRKGEKRENWLLIKERDAAATEDEDHLTEAFDT
SALTGRTMDEIAEDVPAGDHGKPPDPAEHFRKKTPKFTAPELAVLVDEAPEGDDWLHEPK
FDGYRCLAALGTGGVRLYTRSGKDWTDRFHGLAEAFAFIDCDSALIDGEVVSGQAGDPAT
AGFSDLQSDLKTGRPVRFMAFDLIELDGASLKKTPLAERKEKLAALLDSAPGGGPVRYTD
HIRGRGRQVFAGFADGGAEGIISKRADSLYTGKRSGKWRKVKAERRREFVIAGTTPSSAK
GRPFASILLGTRDNGRLVYRGRVGTGYDAATLDRLESRFARLERKTAPFDDEVPREIARD
ARWLTPKLVAEIGYAELTADGRIRHGRFEGLREDKEAGTVSMDNDTQAEADNAGGDDGTL
TVRSIAISSGDRTVFPEAGCTKADVARYYGAVAERMLALAGGRPVSLVRCPRGIEGDCFF
QKHAGKGFPDEIASVPIEEKSGDTEDYLVIDRPEGFVAAAQMGAIEFHVWGARTDNLEKP
DRVVFDLDPGDGVDFDAVRHAAKDVRDFLSGLGLESVAMVTGGKGVHVIVPLRRTAGWET
VTLFARTVATIFAEAEPDRYVATMSKAKRKGKVFIDWLRNERGSTAIAPYSVRSRPGAPV
AMPVTWRALGQLKAANAFTMKSARERLSKPCPLEAADADQAITRDIITKLEEQAGQASRS
NT seq 2523 nt NT seq  +upstreamnt  +downstreamnt
atggcgcagaagtccgacaggctgtccgactatgcggccaggcgcgatttctcggtcacg
cgcgaaccgtccggggaagcgatacccaaaaagcgcggcaagcccgtcttcgtcgtccag
aagcacgatgcgacccgcctgcatttcgatttccggctggaatgggacggcgtgctgctg
agctgggcggtgacgaaggggccgagcgacgatccgtcggtcaagcggctggccgtgcgc
accgaggaccacccgctcgactatcaggacttcgagggcaccatccccaaggacgagtat
ggcgggggcaccgtcatggtctgggacaagggctggtgggcgccgcacggcgatgtcgag
gagggcctcgacaagggcaagcttgggttcgacctgcacggcgcgcggatgagcggcgcc
tgggcgctggtgcggatgcgccgccgcaagggcgaaaagcgcgagaactggctcctgatc
aaggagcgcgacgcggcggcgaccgaagacgaggatcacctgaccgaggcgttcgacacc
agcgcgctgaccggccggacgatggacgagatcgccgaggacgtccccgccggcgatcat
ggcaagccgcccgatccggccgagcatttccgcaagaagacgccgaaattcaccgcgccg
gaactggccgtcctcgtcgacgaggcgcccgagggcgacgactggctgcatgaacccaag
ttcgacggctatcgctgcctcgccgcgctcggcacgggcggggtgcgcctttacacgcgc
tcgggcaaggactggaccgaccggtttcacgggctcgccgaggcgttcgcgttcatcgac
tgcgacagcgcgctgatcgatggcgaggtggtttcgggtcaggccggcgatccggcgacg
gcgggcttttccgatctgcagtccgatctgaagaccggccggccggtgcggttcatggcg
ttcgacctgatcgaactggacggcgcatcgctgaagaagacgccgctcgccgagcgcaag
gaaaagctcgccgcactgctcgacagcgcgcccgggggcggaccggtgcgctataccgac
catattcgcgggcgcgggcgccaggtctttgctggctttgcggacggcggcgccgagggc
atcatctcaaagcgcgccgacagcctctatacgggcaagcggtcgggcaagtggcgcaag
gtcaaggccgaacggcggcgtgagttcgtgatcgccggcacgacgccgtcgtcagcaaag
gggcggcccttcgcctcgatcctgcttggcacgcgtgacaacggcaggctcgtctatcgc
gggcgcgtgggcacggggtacgacgcggcgacgctcgaccggctcgagagccgtttcgca
aggctcgaacgcaagaccgcgccgttcgacgacgaggtgccgcgcgagatcgcccgcgac
gcgcgctggctgacgccgaagctggtcgccgagatcggctatgccgaactgaccgccgac
ggacgcatccggcacggccgcttcgagggcctgcgcgaggacaaggaggccgggaccgtg
agcatggacaacgacacgcaggccgaagcggacaatgccggcggcgacgacgggacgctg
accgtccggtcgatcgccatttcgagcggcgaccgcacggtcttccccgaggccggctgc
accaaggccgacgtcgcccgatactatggcgcggtggccgaacgcatgctggcgctcgcc
ggcggccgtcctgtctcgctggtgcgctgcccgcgcggcatcgagggggactgcttcttc
cagaagcatgcgggcaagggctttcccgacgagatcgcatcggtgccgatcgaggagaag
tccggcgacaccgaagactatctggtcatcgaccggccggaggggttcgtcgccgccgcg
cagatgggggcgatcgaattccatgtctggggcgcgcggaccgacaatctcgaaaagccc
gaccgggtcgtcttcgacctcgatccgggcgacggcgtcgacttcgacgcggtcaggcac
gcggccaaggacgtgcgcgatttcctgtccgggctcggccttgaaagcgtcgccatggtc
accggcggcaagggcgtgcacgtcatcgtgccgctgcgccgcacggccggctgggagacc
gtgacgctgttcgcccggaccgtcgcgacgatcttcgccgaggccgagcccgaccgctat
gtcgccacgatgtccaaggccaagcgcaagggcaaggtgttcatcgactggctgcgcaac
gagcggggatcgacggcgatcgcgccctattcggtgcggtcgcgaccgggcgcaccagtc
gccatgcccgtcacctggcgggcgctcggccagttgaaggcggccaacgcctttacgatg
aaaagcgcccgagagcggctttcgaagccgtgcccgctcgaggcggcggacgccgatcag
gcgatcacacgcgacatcatcacgaaactggaagagcaggccggtcaggcctcgcggtcg
tag

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