Roseobacter ponti: G3256_07365
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Entry
G3256_07365 CDS
T06561
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpon
Roseobacter ponti
Pathway
rpon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3256_07365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpon03019
]
G3256_07365
Enzymes [BR:
rpon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G3256_07365
Messenger RNA biogenesis [BR:
rpon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3256_07365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
AAA_19
P-loop_SecA
DUF5952
Motif
Other DBs
NCBI-ProteinID:
QJF50987
UniProt:
A0A858SSM6
LinkDB
All DBs
Position
1523509..1524870
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AA seq
453 aa
AA seq
DB search
MSDFDMMGLPQQLVDRLNEMGLKDPTPIQKQAIPHALNGRDVMGLAQTGTGKTAAFGVPL
VAQMLEMPGRPAPKSVRGLVLAPTRELATQISVNLRGFAEKTPLKVAMVVGGQSINNQIK
RLERGVDLLVATPGRLLDLMDRRAVRLDQATFLVLDEADQMLDMGFIHDLRKIAKVIPAE
RQTMLFSATMPKLMNEIAQSYLNRPIRVEVSPPGKAADKVTQEVHFIAKSEKANLLIELL
GKHRGERALVFGRTKHGSEKLMKTLVKAGFDAASIHGNKSQGQRDRAIAAFKSGETTVLV
ATDVAARGLDIPDVKHVYNFDLPNVPDNYVHRIGRTARAGKDGAAIAFCAPEEMDELKAI
QKTMGVAIPVGSGRPWEVADIPEGAKPAGRGRRRGGGGGGGGRPKSAGPGGGQQPQGKKP
GGGRRRRRGGKPGGGQSSGQGGRKSGGSGQTAA
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagtgactttgacatgatgggcctgccgcaacagctggtggaccgtctgaatgaaatg
ggtctgaaagacccgaccccgatccagaaacaggccattccgcacgcgctcaacgggcgt
gatgtgatgggtctggcacagaccggtacgggcaaaacggccgcattcggtgtgcctctg
gtggcacagatgcttgagatgccgggtcgtccggcaccgaaatccgtgcgcggtctggtg
ctggcaccgacccgcgaacttgcaacccagatcagcgtgaacctgcgtggctttgccgaa
aagaccccgctcaaagtggcgatggtcgtcggtggtcagtcgatcaacaaccagatcaaa
cggcttgagcgcggcgtcgacctgctggtggccacaccgggccggctgctggatctgatg
gaccggcgcgcggtgcgtctggaccaggcaacctttctggtgctggatgaggccgatcag
atgctcgacatgggtttcatccacgatttgcgtaagatcgcgaaggtgatcccggcggag
cgccagacgatgctcttttcggcgaccatgccaaagctgatgaatgagatcgcgcagagc
tatctgaaccgcccgatccgtgttgaggtctcgcccccgggcaaggccgccgacaaggtg
acgcaggaagtgcatttcatcgccaaatccgagaaggcaaatctgctgattgagcttctg
ggtaagcaccgcggcgagcgggcgctggtgttcgggcgcacaaaacacgggtctgagaag
ctgatgaagacccttgtgaaggcgggctttgacgcggcctccatccacggcaacaaatcg
cagggccagcgcgaccgcgccatcgcggcgttcaaatccggcgagaccactgttcttgtg
gccactgatgtggcggcccgcggcctcgatatcccggatgtaaaacacgtctataacttc
gatctgccaaacgtgccggacaactatgtgcaccgcatcgggcgcactgcgcgcgccggc
aaagacggggccgcgatcgccttttgcgcccccgaagagatggatgagctgaaagcgatc
cagaaaaccatgggtgttgcaattccggtgggctccggtcggccgtgggaagtcgcggat
attcccgaaggcgccaaacccgcaggccgcggccggcgtcgtggtggtggcggcggcggc
ggtggccgtccgaaatccgcaggacccggtggcggacagcaaccgcagggcaagaaaccc
ggtggtggtcgcagacggcgtcgcggcggcaagccaggcggcggccagagcagcgggcag
ggcgggcggaaatccggcggctccggacagactgcggcctga
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