Rhodopseudomonas palustris TIE-1: Rpal_3535
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Entry
Rpal_3535 CDS
T00722
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpt03032
]
Rpal_3535
03400 DNA repair and recombination proteins [BR:
rpt03400
]
Rpal_3535
Enzymes [BR:
rpt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Rpal_3535
DNA replication proteins [BR:
rpt03032
]
Prokaryotic type
DNA Topoisomerases
Rpal_3535
DNA repair and recombination proteins [BR:
rpt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Rpal_3535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
zf-C4_Topoisom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ACF02035
UniProt:
B3Q9Y2
LinkDB
All DBs
Position
3782801..3785536
Genome browser
AA seq
911 aa
AA seq
DB search
MNLVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDADFQMIWEVDPKAAS
RLNDIAKALKGADKLILATDPDREGEAISWHVLEVMKQKRALKDQQVERVVFNAITKQSV
TDAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
ETEIEKFVPREYWSLVATMATPRGETFEARLVGADGKKIQRLDIGTGAEAEDFKKAIEAA
NFRVATVEAKPARRNPYAPFTTSTLQQEASRKLGFAPAHTMRVAQRLYEGVDIGGETVGL
ITYMRTDGVQIDSSAITQARKVIAEDFGNAYVPDAPRQYTAKAKNAQEAHEAIRPTDLSR
RPSDVSRNLDSDQARLYELIWIRTVASQMESAELERTTVDIEAKAGSRVLELRATGQVVK
FDGFLAAYQEGRDDDSEDEDSRRLPAMSENEALKREALAVTQHFTEPPPRFSEASLVKRM
EELGIGRPSTYASILQVLKDRGYVRLEKKRLHGEDKGRVVVAFLESFFTRYVEYDFTAGL
EEDLDRISNNEVSWKQVLSDFWRDFIGAVDEIKDLRVAQVLDVLDEMLGPHIYPAREDGG
DPRQCPSCGNGRLNLKAGKFGAFVGCTNYPECRYTRPLAADGGADADRVLGTDPDTGLEV
AVKSGRFGPYIQLGEAKDYGEGEKPKRAGIPKGTSPSDVELDVALKLLALPREVGKHPES
GQPIKAGIGRFGPYVQHEKTYASLEAGDDVHTIGLNRAVTLIAEKVAKGPSKGRFGADPG
KALGDHPTLGAVAVKKGRYGAYVTAGGVNATIPNDKTDETITLPEAIVLLDERAAKGGGK
AKKAPAKKSAAKKASADGEAKPVKKAAAKKAKPKAEGAAASKARAPVAAKTAAKKAAKPK
DAAKSSAAKNG
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcgtcattgtcgagtcgcccgcgaaggccaagacgatcaacaaatatctcggc
tcgtcctacgaggttctggcctcgttcgggcacgtgcgcgacttgccggcgaagaacgga
tcggtcgacccggacgccgacttccagatgatctgggaagtcgatccgaaagccgcgagc
cggctcaacgacatcgccaaagctctgaagggtgccgacaaactgatcctcgccaccgac
cctgatcgcgagggcgaggcgatctcctggcatgtgctggaggtgatgaagcagaagcgt
gcgctgaaagaccaacaggtcgagcgcgtcgtgttcaacgccatcaccaagcagtcggtc
accgacgcgatgaagcacccgcgccagatcgatggtgcgctggtcgacgcctatatggcg
cgccgcgctctcgactacctggtcgggttcaccctctccccggtgctgtggcgcaagctg
cccggcgcccgctccgccggccgggtgcagtcggtggcgctgcggctggtgtgcgaccgc
gagacggaaatcgagaaattcgtcccccgcgagtactggtcgctggtcgccaccatggcg
acaccacgcggcgagaccttcgaggcccgcctggtcggcgccgacggcaagaagatccag
cggctcgacatcggcaccggcgccgaggcggaagacttcaaaaaggcgatcgaagcggcg
aacttccgcgtcgccaccgtcgaagccaagccggcccgccgcaacccctacgcccccttc
accacctcgacgctgcagcaggaggccagccgtaagctcggcttcgcgccggcgcacacc
atgcgggtggcgcagcggctgtatgaaggtgtcgacatcggcggcgagaccgtcggactc
attacatatatgcgtaccgacggcgtgcagatcgactcgtccgccatcacccaggcgcgc
aaggtgatcgccgaggatttcggcaacgcctatgtgccggacgcaccgcggcaatacacc
gcaaaggccaagaacgcgcaggaagcccacgaagcgatccgcccgaccgacctgtcgcgc
aggccctccgacgtcagccggaacctcgattccgaccaggcccggctgtacgagctgatc
tggatccgcaccgtcgccagccagatggaatccgccgagctcgagcgcaccaccgtcgac
atcgaggcgaaagccgggtcgcgggtgctggagctgcgcgccaccggccaggtggtgaaa
ttcgacggcttcctcgccgcctatcaggaaggccgcgacgacgattccgaggacgaggat
tcccgccgcctccccgccatgagcgagaacgaggcgctgaagcgcgaggccctcgcggtc
acgcagcatttcaccgagccgccgccgcggttctccgaagcgtctctggtgaagcggatg
gaagagctcggcatcggccggccctcgacctacgcctcgatcctgcaggtactgaaggat
cgcggctacgtccggctggaaaagaagcggctgcacggcgaggacaagggccgcgtcgtc
gtcgcgtttctcgagagcttcttcacccgctacgtcgaatacgacttcaccgcgggactc
gaagaagacctcgaccgcatctccaataatgaagtgtcctggaaacaggtcctgagcgac
ttctggcgcgacttcatcggcgcggtcgacgagatcaaggacttgcgcgtcgcccaggtg
ctcgacgtgctcgacgagatgctcggcccgcacatctatccggcccgcgaggacggcggc
gatccgcggcagtgcccgagctgcggcaacggccggctcaacctgaaggccggcaagttc
ggcgccttcgtcggctgcaccaactatccggaatgccgctacaccaggccgctcgctgcc
gatggcggcgccgatgccgatcgcgtgctcggcaccgatccggacaccggcctcgaggtc
gcggtgaagtccggccggttcgggccctacatccaactcggcgaggccaaggattatggc
gagggcgagaagcccaagcgcgccggcatcccgaagggcacctcgccgtccgatgtcgaa
ctcgacgttgcgctgaagctgctggcgctgccgcgcgaagtcggcaaacatccggagagc
ggccaaccgatcaaggccggcatcggccggttcgggccttacgtgcagcacgagaagacc
tatgccagcctcgaagccggcgacgacgtgcacaccatcggtctgaatcgcgcggtgacg
ctgatcgccgagaaggtcgccaagggtccgagcaagggccggttcggcgccgatcccggc
aaggcgctgggcgatcacccgacgctcggcgcggtcgcggtcaagaagggccgctacggc
gcctatgtcaccgccggcggcgtcaacgccacgatcccgaacgacaagaccgacgagacc
atcacgttgcccgaggcgatcgtgctgctcgacgagcgcgccgccaagggcggcggcaaa
gccaagaaggcgccggccaagaagtctgctgccaagaaggcttccgccgacggtgaggcc
aagccggtgaagaaggccgccgccaagaaggccaagccgaaggccgaaggcgccgccgcc
agcaaggcgcgcgcaccggtggcggcaaagaccgcggcgaaaaaggccgccaagcctaaa
gacgcggccaagagcagcgccgccaagaacggatag
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