KEGG   Rhodopseudomonas palustris TIE-1: Rpal_4171Help
Entry
Rpal_4171         CDS       T00722                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rpt  Rhodopseudomonas palustris TIE-1
Pathway
rpt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rpt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Rpal_4171
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpt03400]
    Rpal_4171
Enzymes [BR:rpt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Rpal_4171
DNA repair and recombination proteins [BR:rpt03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Rpal_4171
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: ACF02667
UniProt: B3QGJ0
LinkDB All DBs
Position
complement(4474379..4477123)
Genome map
AA seq 914 aa AA seqDB search
MASNKLSIYRKKRDFEQTAEPRGDAKVAPSKQRRFVIQKHDATRLHYDLRLEYGGVFKSW
AVTKGPSLDPNDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWECDDPERGF
KTGDLKFTLHGEKLHGSWVLVRMRHDRSGGKRTNWLLIKHRDDDAREGGANTVLDDDRSV
ASGRAMETIAEGKGKAPKPFMLRKAAAKVTADAVWDSNTGLAADKRAETGAAKKVAKSKP
KTSAKAKAAKSAKPASRSKLAAQGQRAAMPDFVPPQLCTSVERPPGGEGWGHEIKFDGYR
MQLRVEHGEARLLTRKGLDWTAKFSAIADEAASLPDSIIDTEVVALDSHGQPDFAALQAA
LSDGHTENLICFAFDLLYVDGEDLRGLPLAERKARLAALLKAARGRRKEGLIRYVEHFDT
GGDAILQSACKLSLEGIVSKKLDAAYRSGRSDGWTKAKCRAGHEVVIGGWKTTNGKFRSL
LVGVHRGDVLAYVGIVGTGFGQDVVKRILPELKAHKADTSPFSGANAPKKTRELHWATPD
LVAEIEFAGFTGAGMVRQASFKGLRADKPAEEVEAEEPQRVEVAEPALKRRTAKASKSGK
PAAKRAAPRRADAARSEVMGVAISKPDKELWPASEIGAAITKRDLADYFAEVGDWLIPHI
KGRPCSIVRAPDGIDGEHFFQRHAMPGMSNLIGLAKVSGDRKPYVQIDRVEGLIAAAQIG
GVELHPWNCAPNRYDVPGRLVFDLDPAPEVGFDEVITAAKEMKLRLETLGLATFCKTTGG
KGLHVVVPLKPDDGIDWKAAKTFAQTVCAQMAEDSPEQYLLNMSKQKRIGKIFLDYLRND
RMSTAVAVLSPRARTGATVSMPLTWSQVKAGLDPKRYTIKSVPALMKRSKAWADYDDAAA
PLKAAIKTLTSGKT
NT seq 2745 nt NT seq  +upstreamnt  +downstreamnt
gtggccagcaacaagctcagcatctaccgcaagaaacgcgatttcgagcagaccgcggag
ccgcgtggcgatgccaaggtggcgccgtcgaagcagcggcggttcgtgattcagaagcac
gacgccacccggctgcactacgacctgcgcctggaatatggcggtgtctttaagtcctgg
gcggtgaccaaaggaccgtcgctcgatcccaacgacaagcgccttgctgtcgaggtcgag
gatcatccgctcgactacggtgacttcgaaggcacgattcccaagggtcagtacggcggc
ggcacggtgcagctctgggaccgcggctattgggagtgcgacgatcccgagcgcggcttc
aagaccggcgacctgaagttcaccctgcatggcgagaagctgcatggcagttgggtgctg
gtgcggatgcggcacgaccgcagcggcggcaagcgcaccaattggctgctgatcaagcac
cgcgacgacgacgcccgcgagggcggcgccaacaccgtgctcgacgacgaccgctcggtc
gcctcggggcgcgccatggaaacgatcgcggaaggcaagggcaaggcaccgaagccattc
atgctgcgcaaggcggccgcgaaggtcacggcggacgcggtgtgggattccaacaccggg
cttgcggccgataagcgggcggagactggcgctgcgaagaaagtcgccaagtccaagccg
aagacctccgcgaaagcgaaagctgccaagtccgcgaagccagcgtcgcggagtaagcta
gccgcgcaaggccagcgcgcagccatgccggacttcgtgccgccgcagctctgcacctcg
gtggagcggccgcccggcggcgagggctggggtcacgaaatcaagttcgatggctaccgg
atgcaactccgcgtcgagcatggcgaagccaggctgctgacacgcaagggtctggactgg
accgccaagtttagtgcgatcgccgacgaagcggcatcgctgccggactcgattatcgac
accgaggtggtggcgctggattcgcacgggcagccggatttcgcggcattgcaggcggcg
ctgtccgatggtcacaccgagaacttgatctgcttcgcgttcgatctgctctacgtcgat
ggtgaggatctgcgcggcctgccgttggcggagcgcaaggcgcggcttgcggccctgctg
aaagcagcgcgcggccggcgcaaggaggggctgatccgttacgtcgagcatttcgacacg
ggcggagacgcgatcctgcaatcggcctgcaagctgtcgcttgaggggatcgtatcgaaa
aagctcgacgccgcgtatcgctccggtcgcagcgatggctggaccaaggcgaagtgccgc
gccggccatgaggtggtgatcggtggctggaagaccacgaacggcaaattccgctcattg
cttgtcggcgtccatcgcggcgatgtccttgcctatgtgggcatcgtcggcaccggcttt
ggccaggacgtcgtcaaacgcatcctgcccgagctgaaagcgcacaaagcggataccagt
ccgttcagcggcgccaatgcgccgaagaagacccgtgagttgcattgggctacgcccgat
ctcgtcgctgagatcgaatttgccggcttcaccggcgccggcatggtgcggcaggcgtcg
ttcaagggcctacgtgccgacaagccggcggaggaggtggaggccgaggagccgcagcgg
gtcgaggttgccgagccggcactgaagcgtcgcactgccaaggcttcgaagtcgggcaag
ccggccgcaaagcgcgcggcgccgcgccgggccgatgccgcccgctccgaggtgatgggc
gtggcgatctccaaacccgacaaggagctgtggccggcgagcgagatcggcgccgcgatc
accaaacgcgatcttgccgattacttcgccgaggtcggcgactggctgatcccgcacatc
aagggacggccgtgttcgatcgtgcgggcaccggacggaatcgacggcgagcacttcttc
cagcggcacgcgatgccgggaatgtcgaacctgatcgggctggcaaaggtctcaggcgat
cgtaagccgtatgtgcagatcgatcgtgtggaaggactgatcgcggcggcgcagatcggc
ggggttgagctgcatccgtggaactgtgcgccgaaccgctacgacgtgccgggacgtctg
gtgttcgatctcgatccggcgcctgaggtcgggttcgacgaggtgatcacggccgccaag
gagatgaagctgcggctggaaacgctcgggcttgccaccttctgcaagaccactggcggc
aaggggctgcacgtcgtggtgccgctcaaacccgacgacggcatcgactggaaggcggcg
aagaccttcgcccagacggtgtgtgcgcagatggccgaggatagccccgagcaatatctg
ctcaacatgtcgaagcagaagaggatcggaaagatcttcctcgattacttgcgcaacgac
cggatgtcgaccgcggtcgccgtgctgtcgccacgggcgcgcaccggtgccacggtgtcg
atgccgctgacgtggtcgcaggtgaaggccgggctcgatcccaagcgctacacgatcaag
tcggtgcccgcgctgatgaagcgctcgaaggcgtgggcggattacgacgacgccgcagct
ccgctgaaggccgcgatcaagacgctgacctcgggcaagacatag

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