Agrobacterium pusense CFBP5875: CFBP5875_23885
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Entry
CFBP5875_23885 CDS
T06598
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpus
Agrobacterium pusense CFBP5875
Pathway
rpus03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFBP5875_23885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpus03400
]
CFBP5875_23885
Enzymes [BR:
rpus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFBP5875_23885
DNA repair and recombination proteins [BR:
rpus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFBP5875_23885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QCL87656
LinkDB
All DBs
Position
pAtCFBP5875:complement(117589..118620)
Genome browser
AA seq
343 aa
AA seq
DB search
MKRPAKPLLQNDSLTAKSQPRRRRDPAQPNLPFDPMPDRVEPCLALLKTAPPSGPEWVYE
MKWDGYRLAVHIEPKGVRIITRGGHDWTHRFPTIAAAARDLGVATAILDGEAVVLNGEGR
SDFGALQRSLGGRGGKRASTEAVLFAFDLMYFDGHDLTRTELSVRRHLLGDLLEDATGAI
QLSEEIEADGAELLASACSLGMEGIIAKHRDSTYRSGRTGDWLKIKCVQSESFMIVGYEQ
SAVARGGIGSLLLAARRGHDWVYVGAVGTGFKEKDAAYLKKTLDRLKTKTPVVPLKGRNY
VFAQPTLIAEIEFRGWTDDGNLRHASYKGLREVQDNAAVHELD
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgccccgccaagccgctcctgcagaatgacagcctgacggcaaaatcgcagccg
cgccgcaggcgcgacccggctcagcccaatctaccgttcgacccgatgccagatcgcgtc
gagccatgtctggcgctcctgaagacggccccgccgtccggccccgagtgggtctatgaa
atgaagtgggacggctatcggctcgcggtccatattgagccgaagggggtgcggatcatt
acccggggcggccacgactggacgcaccggtttcccactatcgccgcagcggccagggac
cttggagttgcaacagccatccttgacggcgaagcggtggtgctgaacggcgagggccgc
tccgattttggcgctctgcaacgctcgctcggtgggcgaggcggcaaacgggcgtcgaca
gaagccgtactcttcgccttcgatctaatgtatttcgatggtcacgatctcactcgtacc
gagctgtcggtccgccggcacttgctgggggacctgctggaagacgcgaccggcgcaatc
cagctgtccgaagaaatagaagcggacggcgctgaattattggcgagcgcgtgctccctc
ggcatggaaggcatcatcgcaaaacatcgtgacagcacttatcgctcgggccggaccgga
gactggctgaagatcaagtgtgttcaaagcgagagcttcatgattgtcggctacgagcag
tcggcggtagcgcgcggcgggattggcagtttgctgctggcggcgagacgtggacatgac
tgggtctatgttggcgccgttggaaccgggttcaaggagaaagatgcggcctatctgaag
aagaccttggataggctgaagacgaagacaccggtcgttccgctcaagggcaggaattac
gtcttcgcgcagccgacgctcatcgccgaaatcgagttccgtggctggacggacgatggc
aacctgcgtcatgcgtcctataaaggcctgcgcgaggtacaggacaatgccgcggtccat
gaactcgactga
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