KEGG   Rhodococcus pyridinivorans: Y013_03425Help
Entry
Y013_03425        CDS       T02974                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rpy  Rhodococcus pyridinivorans
Pathway
rpy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rpy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Y013_03425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpy03400]
    Y013_03425
Enzymes [BR:rpy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Y013_03425
DNA repair and recombination proteins [BR:rpy03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Y013_03425
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AHD19810
UniProt: V9XCW0
LinkDB All DBs
Position
complement(717829..718797)
Genome map
AA seq 322 aa AA seqDB search
MPSTTTELSPMLATLGPPPTGNWAFEMKWDGQRTLATVTDGQCRLTSRTGNDITRSFPEL
PHLLTTATGGRDCIVDGEIVTLDSEGRPSFARLQRRMHVHRPTEELRAELPVLIYLFDVL
ALDGQSTTELSYRQRRAVLDDLIVPGPRVQLSPYWTDVDAPTMLTVAREHGLEGIVAKDP
DAPYLPGTRSDGWIKTPLRRNTEVVVVGWLPGSGKAAGGIGSLLLGAHDDEERLVFIGRV
GTGFTAATRRELRSQLRPLERPTTPLAVAPPARETHGAHWVEPILVGEVEYREYAGGSLR
HPSWRGLRTDKTVPEVDLPGRH
NT seq 969 nt NT seq  +upstreamnt  +downstreamnt
atgccctccacgacgacggaactgtccccgatgctggcgaccctcggtccgccgccgaca
gggaactgggcgttcgagatgaaatgggacggccagcgcaccctcgccacggtgaccgac
ggacagtgccggctgaccagccgcaccgggaacgacatcacccggagcttccccgaactc
ccccacctgctcaccaccgcgacgggcggccgggactgcatcgtcgacggcgagatcgtc
accctcgattccgagggtcggccgtccttcgcccggttgcagcgccgcatgcacgtccac
cgtcccaccgaggagctacgcgccgagctaccggtgctgatctacctgttcgacgtcctc
gctctcgacggacagtccacgacggagttgtcctatcggcagcgccgggccgtcctcgac
gatctgatcgtccccggacctcgggttcagctgtcgccctactggaccgatgtcgacgca
ccgaccatgctcacggtcgcgcgcgaacacggcctcgaagggatcgtcgccaaggacccg
gacgcaccgtatctacccgggacccgcagcgacggctggatcaagacgccgctgcgtcgg
aacaccgaggtggtcgtcgtcgggtggctccccggatccggcaaggctgccggcggcatc
ggttcactgctgctcggcgcgcacgacgacgaggaacggttggtgttcatcggccgggtc
gggacgggattcaccgccgcgacccgacgtgagttgcgatcgcagctgcgtcccttggaa
cgaccgacgaccccactggcggttgcgccgccggcacgggagacccacggcgcccactgg
gtggagcccatcctcgtcggagaggtcgagtaccgggagtacgcgggtggaagcctccgg
catccgagctggcgaggactacgcaccgacaagacggtgccggaggtcgatctcccgggc
cgacactga

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