KEGG   Rhodococcus pyridinivorans: Y013_20910Help
Entry
Y013_20910        CDS       T02974                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rpy  Rhodococcus pyridinivorans
Pathway
rpy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rpy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Y013_20910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpy03400]
    Y013_20910
Enzymes [BR:rpy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Y013_20910
DNA repair and recombination proteins [BR:rpy03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Y013_20910
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S Big_4
Motif
Other DBs
NCBI-ProteinID: AHD22913
UniProt: V9XKL3
LinkDB All DBs
Position
4445209..4447617
Genome map
AA seq 802 aa AA seqDB search
MPTRTIDGHRITLTNLDKVLYPSTGTTKGEVVEYYEAVAEAMLPHIVGRAATRNRWPNGV
GEQSFFEKNLPDHAPAWLDRRTLHHKDRRVTYPLFDSAAGLVWLGQQAALELHVHQWRFD
GEKAGPATRIVFDLDPGPGVGLAECAEVARHVRDTVAELGWSAYPVTSGSKGIHLYVPLD
RMLSSSGASKVAKQVARNLETTLPDLVTATMAKSAREGKVFVDWSQNNSSKTTVAPYSLR
GRDEPWVAAPRSWDELDDPDLAQLQFREVLARIEEFGDLLAGLDPPLGKAVSGDKAVSGD
KVVSGDKAGSGGKTVSGGDALDTYRGKRDASRTPEPVPDRVPDDGPGNRFVIQEHHARRL
HYDLRLERDGVLASWAVPKNLPDTSGRNNLAVRTEDHPIEYLTFHGTIPKGEYGAGSMTV
WDTGTYETEKWRDDEVIVRFHGDRIEGRYALIRTEKNQWLAHRMKDQSSPSTESSDADPA
SLVGSSGSKSFPRDLAPMLATSGDVSGLDAEDWAFEGKWDGYRAIAEIEDGTVRLRSRSG
RDVTGDYRKLVELATILDGHRAVLDGEIVAVDRSGVTSFSMLQRGVNYEYRVFDVLYLDG
VSLLRKTYDDRRRVLEALAAATDGLIVPDLLSGDGSKALARSRAKNWEGVVAKRRDSVYL
PGKRGAGWIKSKNWLTQTVVLGGYRRGNGNRASTFGSLLLGVYDDDGEFVYVGKVGTGFD
DETLLSVAKAVKGHTSRTNPFANEVPAAERRDAVWLRPELVGEVRFGGWTEGDRVRHASW
RGLRDDVDASSVVREEETGADC
NT seq 2409 nt NT seq  +upstreamnt  +downstreamnt
atgccgacccggacgatcgatggtcaccgcatcaccctgaccaacctcgacaaggtgctg
tatccgagcaccgggacgacgaagggcgaggtcgtcgagtactacgaagccgtcgccgag
gcgatgcttccccacatcgtcggccgagcagcgacccgtaatcggtggccgaacggtgtc
ggcgaacagtccttcttcgagaagaacctccccgaccacgcaccggcctggctcgaccgt
cgcaccctgcatcacaaggaccggcgggtcacctacccgctgttcgattccgccgccggg
ctcgtctggctcgggcaacaggcagccctcgaactccacgtgcaccagtggcgtttcgac
ggagagaaggccggacccgcgacccgcatcgtcttcgacctcgacccggggcccggcgtg
ggcctggccgagtgtgcggaggtcgcgcgccacgtgcgcgacaccgtcgccgaactcggg
tggtcggcctatccggtcaccagcggcagcaagggcatccacctgtacgtcccgctcgat
cggatgctgtcgtcgtcgggggcgtcgaaggtcgcgaagcaggtcgcgcgcaatctcgag
accacccttcccgacctggtgaccgcgacgatggcgaaatcggcgcgcgagggcaaggtc
ttcgtcgactggagccagaacaacagttccaagacgacggtcgcgccgtactcgctgcgc
ggtcgcgacgagccgtgggtggcggcgccgcgcagctgggacgaactcgacgaccccgac
ctcgcgcaactgcagttccgggaggtcctcgcccgcatcgaggagttcggggacctgctc
gccggtctcgacccgcccctcggcaaggctgtgtccggagacaaggccgtgtccggagac
aaggtcgtgtccggagacaaggccgggtccggcggcaagaccgtgtccggcggagacgcc
ctggacacctaccgcggcaagcgcgacgcgtcgcgcaccccggaaccggtacccgaccgc
gtccccgacgacggccccggcaacaggttcgtcatccaggagcaccacgcgcgtcgcctg
cactacgacctgaggctcgaacgcgacggtgtgctggcgtcgtgggccgtaccgaagaac
ctgccggacacctcggggcgcaacaatctcgcggtacggaccgaggaccacccgatcgag
tacctgaccttccacgggacgatcccgaagggcgaatacggcgccggcagcatgaccgtg
tgggacaccggcacctacgagaccgagaagtggcgggacgacgaggtgatcgtgcggttc
cacggcgaccggatcgagggacggtacgcgctgatccgcaccgagaagaaccagtggctg
gcgcaccgcatgaaggaccagtcgtcgccgagcaccgagtcgtccgatgccgatccggcc
tccctcgtcggatcgtcggggtccaagtccttcccgcgcgatctcgcgcccatgctcgcg
acctccggtgacgtctcgggtctcgacgccgaagactgggcgttcgaaggcaaatgggac
ggataccgcgccatcgcggagatcgaggacggcaccgtcaggctccgcagccgatccggt
cgcgatgtcaccggcgactaccggaagctcgtcgaactcgcgacgatcctcgacggtcac
cgggcggtgctcgacggggagatcgtcgccgtcgaccgctccggggtgacgagcttctcg
atgctgcagcggggcgtgaactacgagtaccgcgtgttcgacgtgctgtatctcgacggg
gtgtcgctgctgcgcaagacctacgacgatcgccgacgggtcctcgaggcgctcgccgct
gccacggacggactgatcgtcccggatctgctctcgggtgacggctcgaaggctctcgcg
cgcagccgcgcgaagaactgggagggcgtggtcgccaaacgccgggactccgtgtatctg
ccgggcaagcgcggcgccggatggatcaaatcgaagaactggctcacccagaccgtcgtg
ctcggcggataccgccgtggcaacggcaaccgtgcctcgaccttcggctccctgctgctc
ggcgtctacgacgacgacggtgagttcgtgtacgtcggcaaggtcggcaccggtttcgac
gacgagacgctcctgtcggtggcgaaggctgtgaaagggcacacgagccgcacgaacccg
ttcgcgaacgaagtgccggccgccgaacgccgcgatgcggtgtggttgcggcccgaactc
gtgggggaggtgcggttcggaggatggacggaaggagaccgggtgcggcacgcgagctgg
cgtggtctgcgcgacgatgtggacgcgtcgagtgtggtgcgagaagaggaaacaggcgct
gactgctaa

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