Rhodococcus pyridinivorans SB3094: Y013_23535
Help
Entry
Y013_23535 CDS
T02974
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03030
DNA replication
rpy03430
Mismatch repair
rpy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Y013_23535
03430 Mismatch repair
Y013_23535
03440 Homologous recombination
Y013_23535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpy03032
]
Y013_23535
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_23535
Enzymes [BR:
rpy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Y013_23535
DNA replication proteins [BR:
rpy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Y013_23535
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Y013_23535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TerD
RNase_T
BRCT
Rv2179c-like
PTCB-BRCT
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AHD23364
UniProt:
V9XMV1
LinkDB
All DBs
Position
4986497..4988299
Genome browser
AA seq
600 aa
AA seq
DB search
MIEVHAPAEGSVTLPRDHRWVVVDVETSGVRPNAHRVLSVAALVLREDGSVEREFSTLVD
PGCDPGPVHIHNLTRERLTGSPRFEDIAGELAGILDGATLVAHNASFDYGFLDAEFRRAG
TSLPAEHRLCTLALSRRLELDVPNYRLATLAQHWQVQQLQEHDAYDDARVLSEIFLRSAA
MADNLQLPLPVVNCRSRKSVYPASIPRVACQWKNPGRLGDDGLVQGMKVVISGSTVTPRV
ALANRLTDAGLDVMNNASKQTSVVVCNDPTVQTAKVRKAMSEGIPVISEHQLEDLLTRVR
PGEPKVATVVDIIPPPEPQVAVVPQVRTLTGQKPKMWTGRKVLLLGGTHLQAVMMRSRLT
QLGARPALNFTAAVTDVLVLEGGEADKRMARVAARELPVLRPDDVDAAVENGVVPPHMRA
ESRLTAPVLSRGEVTDLPSDSHRWAVNVAWKAEAVGDEFDLDIVAFLLGADEKVDTDDDF
VFYNNPLYDDGVVELTIDGSSEHCIRIDLAELPAECERIAIAAAIDGNRTFGELGAVSVG
VDSEAGTAATFVLDAGTTERTMVLAEIYRRAGTWRLRAVGQGYDDDLAALARRYGVEVDD
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgaagtgcatgcaccggcggaggggtccgtgacgttgccccgcgaccatcgatgg
gtggtggtcgacgtcgagacctcgggtgtacgtcccaacgcccacagggtcctgagcgtg
gccgccctcgtgttgcgcgaggacgggtccgtcgagcgagagttctcgactctcgtcgac
cccggctgcgacccgggaccggtgcacatccacaacctcacgcgggagcgcctcaccggg
tcgccgcgcttcgaggacatcgccggcgaactcgccgggattcttgacggcgccacactc
gtcgcccacaacgcgtcgttcgactacgggttcctcgacgccgagttccgtcgggccggc
acctcgcttccggcggagcaccgcctgtgcacgctcgcgttgtcgcgccggctagaactc
gacgtccccaactaccggttggccaccctcgcgcagcactggcaggtccagcagttgcag
gagcacgacgcctacgacgacgcgcgcgtcctgtcggagatattcctgcgcagcgccgcc
atggccgacaacctgcagttgccgctacccgtcgtgaactgccgcagtcgcaagtcggtg
tatcccgcatccatcccgcgggtcgcgtgccagtggaagaacccgggtcgtctcggcgac
gacggcctcgtccagggcatgaaggtcgtgatcagcggctccaccgtcactccgcgtgtc
gcgctcgcgaaccggctgaccgacgccggactcgacgtgatgaacaacgcgagcaagcag
accagcgtcgtggtgtgcaacgaccccacggtgcagaccgccaaggtccgcaaggcgatg
tccgaaggcattcccgtgatcagcgaacaccagctcgaggacctgttgacgcgagtgcgg
ccgggcgaaccgaaggtcgcgaccgtcgtcgacatcatcccaccgccggaaccgcaggtc
gcggtggtgcctcaggtccgaacactgacggggcagaagcccaagatgtggaccggacgc
aaggtgctgttgctcggcggcacgcatctgcaagccgtcatgatgcgctcgcgccttact
cagctcggtgcccggccggccctcaacttcacggccgccgtcaccgacgtgctggtcctc
gaagggggagaggccgacaagcggatggcgcgggtcgcggcgcgcgagctgcccgtcctg
cgacccgacgacgtcgatgccgcggtggagaacggagtggtgcccccgcacatgcgggcg
gagtcgcggctgacggcgccggtgctgtcccgcggtgaggtgaccgacctgccgtccgac
agtcaccgctgggccgtgaacgtcgcctggaaagccgaagccgtcggcgacgaattcgat
ctcgacattgtggccttcctgctcggcgccgacgagaaggtcgacaccgacgacgatttc
gtcttctacaacaacccgctctacgacgacggtgtcgtcgaactgaccatcgacgggtcg
agcgagcactgcatccgcatcgacctcgcggaactccccgccgaatgcgaacgcatcgcc
atcgccgcggccatcgacggcaaccgcaccttcggtgaactcggcgcggtatcggtcggc
gtcgacagcgaggccggcaccgccgcgaccttcgtgctcgacgccggcaccaccgaacgc
accatggtgctcgccgagatctaccgtcgcgccggcacatggcggctgcgcgcggtgggg
cagggatacgacgacgacctcgcagccctcgcccgccggtacggggtggaggtcgacgac
tga
DBGET
integrated database retrieval system
