Rhodospirillum rubrum F11: F11_02025
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Entry
F11_02025 CDS
T02006
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf00300
Lysine biosynthesis
rrf00470
D-Amino acid metabolism
rrf01100
Metabolic pathways
rrf01110
Biosynthesis of secondary metabolites
rrf01120
Microbial metabolism in diverse environments
rrf01230
Biosynthesis of amino acids
Module
rrf_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
F11_02025
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
F11_02025
Enzymes [BR:
rrf01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
F11_02025
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
AEO46875
LinkDB
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Position
complement(472310..473587)
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AA seq
425 aa
AA seq
DB search
MDYFSYRNGQLHAEDVALAAIAEAVGTPFYVYSAATLERHFRVFSDAFAGQPITLCFATK
TNGNKAVLALLAGLGAGADVVSQGEMEHALAAGVPAGRIVFSGVAKTKAEMAAALEAGIF
QINVESEPELEALSEVAQALGKTAPVALRINPDVAAATHDKIATGRKENKFGIDWTVAPA
IFAKAAGLPGIAVKGVAVHIGSQILDLDPFRRAFERLRELVLALRADGIALERVDLGGGL
GIPYHRDDPASPPPAEYAALARRIFGDLGVHLVAEPGRLIAGNAGMLVSRVVYRKQGETR
TFLILDAGFNDLIRPAMYDAFHDILPVTAAAENAVLTPVDVVGPICESGDIFARQRPLPP
IAAGDLVAFATAGAYGASMSSTYNGRPLVPEVMVSGDRFAVVRRRPSVAEMTALESVPPW
LAKQA
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggattatttctcttaccgcaacggccaactccacgccgaggatgtcgccctcgccgcc
atcgccgaggccgtcggcacgcccttctatgtgtattcggccgccacgctcgaacgccat
ttccgggtgttctcggacgccttcgccggccagccgataaccctgtgcttcgccaccaag
accaatggcaacaaggcggtgctcgccctgcttgccggcctgggcgccggcgccgacgtg
gtcagccagggcgagatggaacacgccctggcggcgggcgtcccggccgggcgcatcgtc
ttttccggggtcgccaaaaccaaggccgaaatggccgccgcgcttgaggccggcatcttc
cagatcaacgtcgaatccgagcccgagctcgaggcgctgtccgaggtcgcccaggccctg
ggcaagaccgcgccggtcgccctgcgcatcaatcccgatgtcgccgccgccacccacgac
aagatcgccaccgggcgcaaggaaaacaaattcggcatcgactggaccgtcgcccccgcc
atcttcgccaaggccgccggcctgcccggcatcgccgtcaagggggtcgccgtccatatc
ggctcgcagatcctcgatcttgatcccttccgccgcgcttttgagcgcctgcgcgagctg
gtgctggccctgcgcgccgacggcatcgccctcgagcgtgtcgatcttggcggcggcttg
ggcatcccctatcaccgcgacgatccggcaagcccgccgccggccgagtacgccgccctc
gcccgccgcatcttcggcgacctgggcgtgcatctggtggccgaacccgggcggctgatc
gccggcaacgccgggatgctggtctcccgcgtcgtctatcgcaaacagggcgaaacgcgg
accttcctgatcctcgatgccggcttcaacgacctgatccgtccggcgatgtatgacgcc
ttccacgatatcctgccagtcacggccgccgccgagaacgccgtgctgaccccggtcgat
gtggtcgggccgatctgcgaatcgggcgatatcttcgcccgccagcgcccgctgccgccg
atcgccgcgggggatctggtggccttcgccaccgccggcgcctatggcgcctcgatgtcg
tccacctacaacggccggccgctggtgcccgaggtgatggtgtcgggggatcgcttcgcc
gtagtccgccgccgccccagcgtcgccgaaatgaccgctttggaatcggtgccgccgtgg
ctggccaagcaagcatag
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