KEGG   Rhodospirillum rubrum F11: F11_04880Help
Entry
F11_04880         CDS       T02006                                 

Gene name
ddl
Definition
(GenBank) D-alanine--D-alanine ligase
  KO
K01921  D-alanine-D-alanine ligase [EC:6.3.2.4]
Organism
rrf  Rhodospirillum rubrum F11
Pathway
rrf00473  D-Alanine metabolism
rrf00550  Peptidoglycan biosynthesis
rrf01100  Metabolic pathways
rrf01502  Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:rrf00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00473 D-Alanine metabolism
    F11_04880 (ddl)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    F11_04880 (ddl)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01502 Vancomycin resistance
    F11_04880 (ddl)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:rrf01011]
    F11_04880 (ddl)
Enzymes [BR:rrf01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.4  D-alanine---D-alanine ligase
     F11_04880 (ddl)
Peptidoglycan biosynthesis and degradation proteins [BR:rrf01011]
 Precursor biosynthesis
  Amino acid ligase
   F11_04880 (ddl)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Dala_Dala_lig_C Dala_Dala_lig_N ATP-grasp_3 ATP-grasp_4 GARS_A B12-binding ATPgrasp_Ter ATP-grasp NAD_binding_8
Motif
Other DBs
NCBI-ProteinID: AEO47446
LinkDB All DBs
Position
complement(1130284..1131192)
Genome map
AA seq 302 aa AA seqDB search
MSKRVTVLMGGFSTERAVSLNSGAAAGEALRQAGYAVTLLDVGRDVAAFIAALTQTRPDV
VFNALHGRFGEDGAIQGILDIMALPYTHSGRLASAIAMDKPSAKLVFERFAIPVAPHVVA
DRASVLAETAMARPYVVKPLDQGSSVGVTIVTSETNDLPFSRDDWPYGRQVMVERFIPGR
ELTVGVMGDKALGVTEIVTDHRFYDYDAKYAQGGSRHIVPAPVAPEVFAQAQELSVLAHQ
ALGCRGVSRADLRFDGETLYMLEVNTQPGMTDTSLVPEQALHAGISFPDLVTWLVETAQC
DA
NT seq 909 nt NT seq  +upstreamnt  +downstreamnt
atgagtaagcgcgtgaccgttctgatgggcggcttttcgaccgagcgtgcggtgtcgcta
aacagcggcgcggcggccggcgaggccttgcgtcaggccggctacgccgtgaccttgctc
gatgtcggccgcgatgtcgccgccttcatcgccgccctcacccaaacccgcccggatgtg
gtgttcaacgccctccacggccgtttcggcgaggacggcgccatccagggcatccttgac
atcatggccctgccctatacccattcgggccggctggccagcgccatcgccatggacaag
cccagcgccaagctggtgttcgagcgcttcgccatccccgtcgccccccatgtcgtcgcc
gaccgcgccagcgttctggccgaaaccgccatggcccgcccctatgtggtcaagcccctt
gatcaggggtcgagcgtcggggtgaccatcgtcaccagcgaaaccaatgatctgccgttt
tcgcgcgacgactggccctatggccgtcaggtgatggtcgaacgcttcatccccggccgc
gaactgaccgtcggcgtcatgggcgacaaggccctgggcgtcaccgagatcgtcaccgac
caccgcttctacgactacgacgccaaatacgcccagggcggttcgcgccatatcgtgccc
gccccggtcgcccccgaggtcttcgcccaggcgcaagagctttcggtgctggcccatcag
gccctgggatgccggggcgtcagccgcgccgacctgcgcttcgacggcgaaaccttgtac
atgctcgaggtcaatacccagccggggatgacggacacctcgttggtccccgagcaggcc
cttcatgccggcatctcctttcccgatctggtcacctggctcgtggagaccgcccaatgc
gacgcgtga

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