KEGG   Rhodococcus rhodochrous: 4535765_00993Help
Entry
4535765_00993     CDS       T05521                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rrt  Rhodococcus rhodochrous
Pathway
rrt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rrt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    4535765_00993
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rrt03400]
    4535765_00993
Enzymes [BR:rrt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     4535765_00993
DNA repair and recombination proteins [BR:rrt03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     4535765_00993
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S Big_4
Motif
Other DBs
NCBI-ProteinID: SNV13781
LinkDB All DBs
Position
1:1043973..1046324
Genome map
AA seq 783 aa AA seqDB search
MPTRTIDGHRITLTNLDKVLYPSTGTTKGEVVEYYEAVADAMLPHIVGRAATRNRWPNGV
GEQSFFEKNLPDHAPAWIDRRTLHHKDRRVTYPLFDSAAGLVWLGQQAALELHVHQWRFD
GEKAGPATRIVFDLDPGPGVGLAECAEVARHVRDTVAELGWTAYPVTSGSKGIHLYVPLD
RMLSSSGASKVAKQVARNLETTLPDLVTATMAKSAREGKVFVDWSQNNSSKTTVAPYSLR
GREEPWVAAPRSWDELDDPDLGQLQFREVLARIDEFGDLLAGLDPPLGKAGSSGKAGSGD
ALDAYRGKRDASRTPEPVPDRVPEDGPGNRFVIQEHHARRLHYDLRLERDGVLASWAVPK
NLPDTSGRNNLAVRTEDHPIEYLTFHGTIPKGEYGAGSMTVWDTGTYETEKWRDDEVIVR
FHGDRVEGRYALIRTEKNQWLAHRMKDQSPPSTGSSDAEPASLVGSSGSKAFPRDLAPML
ATPGDVSGLDAEDWAFEGKWDGYRAIAEIEDDTVRLRSRSGRDVTGDYRKLAELATILDG
HRAVLDGEIVAVDRSGVTSFSMLQRGVNYEYRVFDVLYLDGVSLLRKSYDDRRRVLEALA
AATDGLIVPDLLPGDGSKALERSRVKNWEGVVAKRRDSVYLPGKRGAGWIKSKNWLTQTV
VLGGYRRGKGNRASTFGSLLLGVYDDDGEFVYVGKVGTGFDDETLLSVTKTMKGRTSRTN
PFANEVPAAERRDAVWLRPELVGEVRFGGWTDGDRVRHASWRGLRDDVDASSVVREEETG
ADC
NT seq 2352 nt NT seq  +upstreamnt  +downstreamnt
atgccgacccggacgatcgacggtcaccgcatcaccctgaccaacctcgacaaggtgctg
tatccgagcaccgggacgacgaagggtgaggtcgtcgagtactacgaagccgtcgccgac
gcgatgcttccccacatcgtgggcagggcagcgacccgcaaccggtggccgaacggtgtc
ggcgaacagtccttcttcgagaagaacctccccgaccacgcaccggcctggatcgaccgt
cgcaccctgcaccacaaggaccgccgggtcacctacccgctgttcgattccgccgccgga
ctcgtctggctcgggcagcaggccgccctcgaactccacgtgcaccagtggcgtttcgac
ggagagaaggccggacccgcgacccgcatcgtcttcgacctcgatccgggccccggcgtg
ggcctggccgagtgcgcggaggtcgcccgccacgtgcgcgacaccgtcgccgaactcgga
tggacggcctatccggtcaccagcggcagcaagggcatccacctgtacgtcccactcgat
cggatgctgtcgtcgtcgggggcgtcgaaggtcgcgaagcaggtcgcacgcaatctcgag
accaccctgcccgacctggtgaccgcgacgatggcgaagtcggcgcgcgagggcaaggtc
ttcgtcgactggagccagaacaacagttccaagacgacggtcgcgccgtactcgctgcgc
ggccgcgaggagccgtgggtggcggcgccgcgcagctgggacgagctcgacgaccccgac
ctcgggcaactgcagttccgggaggtcctcgcccgcatcgacgagttcggggatctgctc
gccggtctggacccgcccctcggcaaggccgggtccagcggtaaggccgggtcgggagac
gccctggatgcctaccgcggcaagcgcgacgcgtcgcgcaccccggaaccggtacccgac
cgcgtccccgaggacggccccggcaacaggttcgtcatccaggagcaccacgcgcgtcgc
ctgcattacgacctgcgcctcgaacgcgacggtgtgctggcctcgtgggccgtaccgaag
aacctgccggacacctcggggcgcaacaatctcgcggtacggaccgaggaccacccgatc
gagtacctgaccttccacgggacgatcccgaagggcgagtacggcgccggcagcatgacc
gtgtgggacaccggcacctacgagaccgagaagtggcgggacgacgaggtgatcgtgcgg
ttccacggcgacagggtcgagggacggtacgcgctgatccgcaccgagaagaaccagtgg
ctggcgcaccgtatgaaggaccagtcgccgccgagcaccgggtcgtccgatgccgagccg
gcctccctcgtcggatcgtcggggtccaaggccttcccgcgcgatctcgcgcccatgctc
gcgacccccggcgacgtctcgggtctcgatgccgaagactgggcgttcgaaggcaagtgg
gacggataccgcgccatcgcggagatcgaggacgacaccgtcaggctccgcagccgatcc
ggacgcgatgtcaccggcgactatcggaaactcgctgaactcgcgacgatcctcgacggt
caccgggcggtgctcgacggggagatcgtcgccgtggaccgatccggggtgacgagcttc
tcgatgctgcagcggggcgtgaactacgagtaccgcgtgttcgacgtgctgtatctcgac
ggggtgtcgttgctgcgcaagagctacgacgatcgccgacgagtcctcgaggcgctcgcc
gccgcgacggacggattgatcgtcccggatctgctcccgggtgacggttcgaaggccctc
gaacgcagcagagtgaagaactgggagggcgtggtcgccaagcgccgggactccgtgtat
ttgccgggcaagcgcggcgccgggtggatcaagtcgaagaactggctcacccagaccgtc
gtgctcggcggataccgccgcggcaagggcaaccgtgcctcgaccttcggctccctgctg
ctcggcgtctacgacgacgacggcgagttcgtgtacgtcggcaaggtcggcaccggtttc
gacgacgagacgctcctgtcggtgacgaagaccatgaaagggcgcacgagccgcacgaac
ccgttcgcgaacgaggtgccggccgccgaacgccgcgatgcggtgtggttgcggcccgaa
ctcgtcggggaggtgcgattcgggggatggacggatggggaccgtgtgcggcacgcgagc
tggcgcggtctgcgcgacgacgtggacgcgtcgagcgtggtgcgagaagaggaaacgggc
gccgactgctaa

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