Rhodococcus ruber: CS378_01575
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Entry
CS378_01575 CDS
T05142
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CS378_01575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrz03019
]
CS378_01575
Messenger RNA biogenesis [BR:
rrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CS378_01575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Peptidase_M16_C
Motif
Other DBs
NCBI-ProteinID:
ATQ27543
UniProt:
A0A098BKL4
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Position
343104..344921
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AA seq
605 aa
AA seq
DB search
MSRPSRGRGRATRNAGPPSTRPVRRTVQNSADTQRPDPRKVADMSVRLGTPPKAPRKGLR
VVALGGIGEIGRNMTVFEHQGKLLVIDCGVLFPEDQQPGVDLILPDFRHIEDRMDDVEAV
VLTHGHEDHIGAVPFLLRLRPDIPVVGSKFTLALVAAKCREHRLRPNLVEVVEGDRTTHG
PFECEYFAVNHSIPDALAVAVRTEAGLVLHTGDIKLDQLPLDGRLTDLAGFSRLGDEGVD
LFLVDSTNAEVPGFVMPEREIGGVLDNVIGKATQRVIVASFASHVHRIQQVVDVAERYNR
RIAFVGRSMVRNMQIAQDLGYLRVPDGLVVDLDTAATLPDNRLVLISTGSQGEPLSALSR
MARGEHRQINIRADDLVVLASSLIPGNENSVFAVVNGLAKRGATVVTQQNAKVHVSGHAS
AGELLYLYNAVRPTNAMPVHGEWRHLRANAALAEATGVPRERIVLAEDGVVVDLVDGLAE
IVGQVPVGHVYVDGLSVGDVGESTLSDRLILGEGGFISISVAVDENGRAVSTPGVSGRGF
SDDPGALSEAAQLVDKVLNELAAEGIDDAHRIAQAIRRVVGRWVSDTYRRRPMIVPTVIT
VPGPA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcccgtcgcgcggccggggccgcgccacccgcaacgccggaccgcccagcacc
cggcccgtccgccggaccgtgcagaattcggccgacacccagcggcccgacccgcgcaag
gtcgcggacatgtcggtgcgtctgggcaccccgccgaaggcaccgcgcaagggtctgcgc
gtcgtcgcgctcggcggcatcggcgagatcggccgcaacatgacggtcttcgagcaccag
ggcaagctcctcgtcatcgactgcggcgtgctcttccccgaggatcagcagcccggcgtc
gacctcatcctgccggacttccggcacatcgaggaccgcatggacgacgtcgaagccgtc
gtcctcacccacgggcacgaggaccacatcggggcggtgccgttcctgctgcggctgcgt
cccgacatcccggtcgtgggttcgaagttcaccctcgcactcgtcgccgcgaaatgccgc
gagcaccggctgcgtcccaacctcgtcgaggtcgtcgagggggacaggaccacgcacggg
ccgttcgagtgcgagtacttcgccgtcaaccactcgatcccggacgcgctcgccgtcgcc
gtccgtaccgaggccggcctcgtgctgcacaccggcgacatcaaactcgaccagttgccg
ctcgacggccgcctcaccgacctcgccggcttctcccggctcggtgacgagggcgtcgac
ctgttcctcgtcgactccaccaatgccgaggttcccggcttcgtgatgccggaacgcgaa
atcggcggcgtgctggacaatgtcatcggcaaggccacccagcgcgtgatcgtcgcgtcc
ttcgccagccacgtgcatcgcatccagcaggtcgtcgacgtcgccgagcggtacaaccgc
cgcatcgccttcgtcgggcggtcgatggtgcgcaacatgcagatcgcgcaggacctcggt
tacctgcgggtgccggacgggctcgtcgtcgatctcgacaccgcggcgacgttgcccgac
aaccggctcgtgctgatctccaccggctcccagggggaaccgctgtccgcgctctcccgg
atggcgcggggcgaacaccggcagatcaacatccgggccgacgacctcgtcgtcctggcg
tcctcgctgatcccgggcaacgagaactcggtgttcgcggtcgtcaacggcctcgccaag
cgtggcgccaccgtcgtcacccagcagaacgcgaaggtgcacgtctccggccacgcctcc
gcgggcgaactgctgtacctgtacaacgcggtgcgcccgacgaacgcgatgccggtgcac
ggtgaatggcggcacctgcgggccaacgcggcgctcgccgaggcgaccggggttccgcgg
gagcggatcgtgctggcggaggacggcgtggtcgtcgacctcgtcgacgggctcgcggag
atcgtcgggcaggtacccgtcggccacgtctacgtcgacggcctgtcggtcggcgacgtc
ggcgaatccaccctgtcggaccggctgatcctcggcgagggcggcttcatctccatctcc
gtcgccgtcgacgagaacggccgcgccgtgagcacgccgggggtgtccggccgcgggttc
tccgacgacccgggggcactgtccgaggccgcgcagctcgtggacaaggtcctcaacgaa
ctcgctgccgagggcatcgacgacgcccaccgcatcgcccaggcgatccgccgcgtcgtc
gggcgctgggtgtccgacacctaccgtcgccggccgatgatcgtgccgacggtgatcacc
gttccgggtccggcgtag
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