KEGG   Rhodococcus ruber: CS378_21645Help
Entry
CS378_21645       CDS       T05142                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rrz  Rhodococcus ruber
Pathway
rrz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rrz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CS378_21645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rrz03400]
    CS378_21645
Enzymes [BR:rrz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CS378_21645
DNA repair and recombination proteins [BR:rrz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CS378_21645
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ATQ31087
LinkDB All DBs
Position
4737244..4739505
Genome map
AA seq 753 aa AA seqDB search
MTTRTFEGRRLNLTNLDKVLYPETGTTKADVVDYYVAVAPVMLPHVAGRPGTRKRWPEGV
GGESFFEKNVASHAPKWLTRKTVHHKQRSVTYPVFDSVAALAWLGQQAALELHVPQWRFA
GSVPGPATRIVFDLDPGEGVTLVQCAEVARLVRDMVGGLGWPAYPVTSGSKGIHLYVPLD
RELAPGGASAVAKQVAINLETLHPDLVTATMAKAARGGRVFLDWSQNNQAKTTIAPYSLR
GREQPWVAAPRTWDELDDPGLRQLRFDEVLARLDTAPDPLADLDPPRPEPDALTEYRGKR
DPSRTPEPVPAAVGSGPGNAFVIQEHHARRLHYDLRLERDGVLASWAVPKNLPDDPGRNN
LAVRTEDHPLEYLTFHGVIPKGEYGAGSMTIWDTGSYETEKWRDDEVIVRLHGARVRGRY
ALIRTAGNQWLAHRMKDQGGQAGPPSGFPRDLEPMLATPGEVTGLDADEWAFEGKWDGYR
AVAEIENGQLRLHSRSGRDITGDYPALADLTRVLDGHDVVLDGEVVACDPGGVTSFPLLR
TGGTPQYFVFDVLYLDGVTLYRKPYADRRRVLDALAAATDGLIVPDVLRGNGSEALEEST
RRGWEGVVAKRRNSVYVPGRRSPDWVKSKNWLTQDVVIGGWRLGKGARAGTFGSLLVGVH
GEAGLEYVGRVGTGFDEPELADLSVALAGLRRRTTPFAGDVPREDARDAVWVTPKLVGEV
RFREWTDAGKLWHPSWRGLRDDIDPQDVKRPAQ
NT seq 2262 nt NT seq  +upstreamnt  +downstreamnt
atgacgacccgcacgttcgaaggccgtcgtctgaacctgacgaacctcgacaaggtgctc
tacccggagacgggcaccacgaaggccgacgtggtcgactactacgtggccgtggccccg
gtgatgctgccgcacgtcgcgggccggcccggcacccgcaagcgctggcccgaaggtgtc
ggcggcgagtcgttcttcgagaagaacgtcgcctcccacgcgccgaagtggctcacccgt
aagacggttcaccacaagcagcgttcggtcacctatccggtcttcgactccgtcgcggcg
ctggcctggctcgggcagcaggcggcactcgaattgcacgtgccgcagtggcggttcgcg
ggttccgttccgggccctgcgacgcggatcgtgttcgacctcgaccccggggagggggtc
accctggtccagtgcgccgaggtggcccggctggtgcgcgacatggtcggcgggctgggc
tggccggcctacccggtcaccagcggcagcaaggggatacacctgtatgttccgctcgac
cgcgaactcgccccgggtggggcgtcggccgtggcgaagcaggtggcgatcaacctcgag
actctgcatccggacctggtcaccgcgacgatggccaaggccgcacgcggcgggcgggtg
ttcctcgactggagccagaacaaccaggccaagacgaccatcgccccgtattccctgcgc
ggccgcgagcaaccgtgggtcgccgcgccccgcacctgggacgaactcgacgatcccggg
ctgcgccagttgcggttcgacgaggtgctcgcgcgactggacaccgctcccgacccgctc
gccgacctcgacccgccgcggcccgagcccgacgccctgaccgagtaccggggcaaacgc
gacccgtcccgcacgcccgaacccgttcccgccgccgtgggttccgggccgggcaacgcc
ttcgtcatccaggaacaccatgcccgccggctgcactacgacctgaggctcgaacgcgac
ggggtgctcgcgtcgtgggcggtaccgaagaacctgccggacgacccgggccgcaacaac
ctcgcggtgcgcaccgaggatcatccgctcgagtacctcaccttccacggcgtcatcccc
aagggggagtacggcgccggcagcatgacgatctgggacaccggcagctacgagaccgag
aagtggcgcgacgacgaggtgatcgtgcgcctgcacggcgcgcgggtgcggggccggtac
gcgctgatccgcacggcgggcaaccagtggctcgcccaccgcatgaaagaccagggcgga
caggcgggtccgccctcgggatttccgcgcgacctcgagcccatgctcgcgacaccgggt
gaggtgaccggtctcgacgccgacgaatgggccttcgaagggaagtgggacggctaccgc
gccgtggccgagatcgagaacgggcagctgcggctgcattcgcgctccggccgcgacatc
accggcgactaccccgccctcgccgacctcacccgcgtcctcgacggacacgacgtcgtc
ctcgacggggaggtggtcgcgtgcgaccccggcggagtcacgagctttccgttgctgcgg
accggcggcaccccgcagtacttcgtgttcgacgtcctctacctcgacggggtgaccctg
taccgcaagccctacgccgaccggcgacgcgtgctcgacgcgctcgcggccgcgaccgac
ggattgatcgtgccggacgtgctgcgcggcaacggatccgaggcgctcgaggagagcacc
cggcgcggctgggaaggcgtggtggccaagcggcggaactcggtgtacgtgccgggccgg
cgcagccccgactgggtgaagtcgaagaactggctcactcaggacgtcgtcatcggtggc
tggcgcctcgggaagggggctcgtgccggcaccttcggctcgctgctggtcggcgtgcac
ggcgaggccgggctggagtacgtcggccgtgtcggcaccggcttcgacgaacccgagctc
gccgatctgtcggtcgccctggccggtctgcggcgccgcaccacccccttcgccggtgac
gttccgcgcgaggacgcgcgggacgctgtgtgggtgaccccgaaactggtgggggaggtg
cggttccgggaatggaccgacgccggcaagctctggcatccgagctggcgcgggctgcgc
gacgacatcgacccccaggacgtgaagaggcccgcgcagtag

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