KEGG   Rhodobacter sphaeroides ATCC 17029: Rsph17029_1337Help
Entry
Rsph17029_1337    CDS       T00484                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rsh  Rhodobacter sphaeroides ATCC 17029
Pathway
rsh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rsh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Rsph17029_1337
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rsh03400]
    Rsph17029_1337
Enzymes [BR:rsh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Rsph17029_1337
DNA repair and recombination proteins [BR:rsh03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Rsph17029_1337
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ABN76447
UniProt: A3PJD1
LinkDB All DBs
Position
1:complement(1385803..1388409)
Genome map
AA seq 868 aa AA seqDB search
MPANPRQDLDRYRAKRDFARTPEPQGRSEAPRPEAESLSFVVQKHAASRLHWDFRLEWNG
VLLSWAVTRGPSPDPSARRLAVRTEDHPLDYAEFEGTIPKGEYGGGTVMLWDRGTWEPQG
DFAEGLRTGQLKIRLAGERMRGRWTLVRMKPRPREKAENWLLIKEHDTHESEQTEELVER
HMTSVATGRTMEQIAAGKAPRRRTRKADLPAFRPLQLARLVPAAPEGEDWIHETKFDGYR
CLAALAGGRARLYTRSGLDWTAKFGALVEDIEALEAEEALIDGEVIAPGREGGSFSELQA
RLKSGGQLLFMAFDLLLLDGEDLTGQPLLARKERLETLIGKGRGAVRFSGHIRGHGPEVH
ERICAAGLEGIVSKRASAPYAGSRNGDWLKVKCAHRQEFVICGWNASDKPGRPFASLVMG
SYEKSRLVYRGSVGSGFGAPLFRELKPLLAERAQSACPFDRTPAEAKGAHWLKPELVAEV
SFTELTAEGHIRHGVFAGLRRDKDAREVRLEEPAPETPATRKSGVRKKGTKTARPDAPSP
DEPAPEPARKPRTARGEKKETTMARPDDLRVAGIRISHPDRRIYDRPAITKHEVAEHAEA
LAPRMLRFLKDRPVSLLRCPDGAAAECFFQKHRTRGMPAAMKTVTVETKSGPEDFITLPD
VAALVGATQMGTLEFHIWGSRNRSLQRPDRLVFDLDPDEGLDFAHVRTAAAELRGLLADL
GLPSVPMLSGGKGVHVIVPLKPKAEWESVKLFSRALATHLAQEAPDRYTATMAKAGRKGR
IFIDWLRNDRGSTAIAPYSLRARPGAPVATPVDWDELASARSGGDWTIRSIRDRLDRPCP
LAEASARPATLGRTVIGRLERLVAGGKP
NT seq 2607 nt NT seq  +upstreamnt  +downstreamnt
atgcccgccaacccgcgacaggatctcgaccgctaccgcgccaagcgcgacttcgcgcgc
acgcccgagccgcagggccgctccgaggcgccgcgccccgaggcggagagcctgtcgttc
gtcgtgcagaaacatgcagcctcccgtctgcactgggatttccggctggagtggaacggc
gtccttctgagctgggccgtgacgcgcggcccctcgcccgatccgtccgcccgcaggctt
gcggtgcgaaccgaggatcatccgctggattatgccgagttcgagggaacgatccccaag
ggcgaatatggcggcggcacggtcatgctctgggaccggggcacctgggaaccgcagggc
gactttgcggaggggctgcggaccggtcagctcaagatccgcctcgcgggcgagcggatg
cgcggccgctggacgctggtgcgcatgaaacccaggccgcgcgagaaggccgagaactgg
ctcctcatcaaggagcacgacacgcatgaaagcgagcagaccgaggagctggtcgagcgg
cacatgacctcggtcgcaacggggcggaccatggagcagatcgccgccggcaaggcgcca
agacggcgcacgcgcaaggccgacctgcccgccttccggccgctccagctcgcgcgtctc
gttccggcggcgcccgagggagaggactggatccacgagaccaagttcgacggctaccgc
tgcctcgcggccctcgcgggaggccgggcccgcctctacacccgctccggcctcgactgg
acggccaagttcggcgccctcgtcgaggatatcgaggcgcttgaggccgaggaggcgctg
atcgacggcgaggtgatcgcgccgggccgggagggcggctccttttcggagctgcaggca
cggctgaaatcggggggccagctcctcttcatggccttcgacctactgctcctcgacggc
gaggacctgaccggacagccgcttctcgcgcggaaggagcggctcgagacgctgatcggc
aaggggcgcggcgcggtgcgcttctcgggccacatccgcggccacggccccgaggtgcac
gagcgcatctgtgcggcaggcctcgaagggatcgtctcgaagcgggcctccgcgccctat
gcgggcagccggaacggcgactggctgaaggtgaaatgcgcgcaccggcaggaattcgtg
atctgcggctggaacgcctcggacaagccgggccgtcccttcgcctcgctggtgatgggc
agctacgaaaagagccgtctggtctaccgcggcagtgtcggcagcggcttcggcgccccc
ctgttccgcgagttgaagccgcttctggccgaacgggcgcaaagcgcctgccccttcgac
cgcacgccggccgaggccaagggggcgcactggctgaagcccgagctggtggccgaggtg
agcttcaccgaactgacggcggaggggcacatccggcacggggtcttcgccggcctgcgg
cgcgacaaggacgcgcgcgaggtgcggctcgaggagcccgcgcccgaaacgcccgcgacc
cggaagtcgggcgtgcggaagaaggggacgaagacggcccggccagacgccccctcaccc
gacgagcccgcccccgagcctgcccggaaaccccggacggcgcgcggggagaagaaggag
acgacgatggcccgacccgacgacctgcgcgtcgcaggcatccgcatcagccaccccgac
cggcggatctacgaccggcctgccatcacgaaacacgaggtggcggagcatgccgaggca
ctggcgccgcggatgctgcgcttcctgaaggatcgccccgtctcgctcctgcgctgcccc
gacggggcggcggcggagtgcttcttccagaagcaccgcacccgcggcatgcccgccgcg
atgaagacggtgaccgtcgagacgaaatcgggacccgaggatttcatcaccctgcccgat
gtcgcggctctggtcggggccacgcagatggggacactcgaattccacatctggggctcg
cgcaaccgcagccttcagcgaccggaccggctggtgttcgatctcgaccccgacgagggt
ctcgacttcgcccatgtgcggaccgcggcggccgagctgcgcggtctgctcgcggacctc
ggcctgccctcggtgccgatgctgtccggcggcaagggggtgcatgtgatcgtgccgctg
aagcccaaggccgaatgggagagcgtgaagctcttctcgcgggcgctcgccacccatctg
gctcaggaggcgcccgaccgctacacggccacgatggccaaggccgggcgcaagggccgg
atcttcatcgactggctgcggaacgaccgcggctcgacggcgatcgctccctacagcctg
cgcgcccgcccgggcgcgccggtggcgacgccggtcgactgggacgaactcgcctcggcc
cggtcgggcggcgactggacgatccgctccatccgcgaccggctcgaccggccctgcccg
ctggccgaggcctccgcccggcccgcgacactgggccggaccgtgatcgggcggctcgag
cgacttgtggcaggagggaaaccatga

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