Runella slithyformis: Runsl_3366
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Entry
Runsl_3366 CDS
T01553
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rsi
Runella slithyformis
Pathway
rsi03030
DNA replication
rsi03410
Base excision repair
rsi03420
Nucleotide excision repair
rsi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Runsl_3366
03410 Base excision repair
Runsl_3366
03420 Nucleotide excision repair
Runsl_3366
03430 Mismatch repair
Runsl_3366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsi03032
]
Runsl_3366
03400 DNA repair and recombination proteins [BR:
rsi03400
]
Runsl_3366
Enzymes [BR:
rsi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Runsl_3366
DNA replication proteins [BR:
rsi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Runsl_3366
DNA repair and recombination proteins [BR:
rsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Runsl_3366
NER (nucleotide excision repair)
GGR (global genome repair) factors
Runsl_3366
MMR (mismatch excision repair)
DNA ligase
Runsl_3366
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Runsl_3366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
HHH
zf-C4_Topoisom
Auto_anti-p27
zf-ribbon_3
zf-ACC
Motif
Other DBs
NCBI-ProteinID:
AEI49732
UniProt:
A0A7U3ZM47
LinkDB
All DBs
Position
3921801..3923909
Genome browser
AA seq
702 aa
AA seq
DB search
MTKLPNEPMHNPADRITELTDLLNYFNHRYYQDSVSEVSDYEFDILLQELTDLESRHPDL
RRDDSPTLRVGGSITKNFATVYHRYPMLSLGNTYNEQDLRDFDERVRKGLYGEAYEYVCE
LKFDGISLSMTYENGVLKRAVTRGDGTRGDDITGNVRTIKTLPLKIRSEEQGAGAFPAVF
EVRGEGFMPISSFEKLNKDLEAADEPTYANPRNAASGAFKLQDSAESARRGLDCYLYAFM
SDEVFFETHEQSLLTLKQWGFNVSPSWRKCADMDEVLAYIHEWETKRHTLPLATDGIVIK
INSIAQQRELGFTAKSPRWAIAFKYKAENKAGVLKSVSYQVGRTGALTPVANLDNLNEDG
KGLQLSGTRVKRASLHNANEIERLDLRINDVVFVEKGGEIIPKITGIDAEQRPERLTFSI
TYPTRCPECGTELVRKETEANHYCPNERGCPPQLRGKVEHFIHRKALNIDSLGEGKIELL
FDKNLVQTPADLYDLTYEKLFGLEKVITDEETGKTKKIGFKEKTVENILKGLEQSKLAPF
KQVLFGIGIRFVGATVAEKLAAYFRNIDALMAADYASLCNVPEIGGKIAQSVVDYFADAE
NRNYIERLRAAGLQFETDTIPVVAESNALEGKSFLYTGTFAGMTREELEAKIEANGGKLL
SGVSAKLNYLIVGEKPGASKLDKANRLNVKLISEEEFLGMLG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgactaagctaccaaacgaacccatgcacaaccctgccgaccgcatcaccgaactgacc
gatctcctcaattatttcaaccaccgctactatcaggacagcgtatcggaagtcagtgat
tatgagtttgatatactcctgcaggaacttacagacttagaaagtcgtcaccccgacctg
cgtcgcgacgactcgcctacgctgcgggtgggaggaagcattacgaagaattttgcgacg
gtataccaccgctatccgatgctgtcgctgggcaatacctacaacgaacaggatctccgc
gactttgatgagcgcgtgcggaaggggctctacggtgaagcctacgagtatgtgtgtgag
ctcaaatttgacggtatatcgctcagcatgacctacgaaaacggcgtattgaagcgggcc
gtgacgcgcggcgacggcacccggggcgatgatattacgggcaatgttcggaccatcaag
accctgccgctgaaaatcaggagcgaggagcagggagcaggggcctttccggccgtcttc
gaggtgcgcggcgaagggtttatgcctatctcgtcgtttgaaaaactcaacaaagacctg
gaagcggccgatgagcccacctacgccaatcctcgcaatgccgcttccggagcgtttaaa
ttgcaggattcagccgaatcggcgcggcgggggttggattgttatctgtacgcgtttatg
tcggatgaggtcttttttgaaacccacgagcaaagcttactgacgctcaaacaatggggc
ttcaacgtgtcgccgagttggcgaaaatgtgccgatatggacgaagtgctggcctatatt
cacgaatgggaaaccaaacgtcatacattgccgctggcgaccgacggcattgtgatcaaa
attaattcgattgcccaacagcgtgaattaggcttcacggccaaaagtccgcgttgggcc
attgcgtttaaatataaggcggaaaataaggccggtgtgttgaaatccgtctcgtatcag
gtaggccgtacgggggcactcacgcccgttgccaatttggacaatcttaacgaagacggc
aaaggcctgcaattgtcgggcacgcgggtaaaacgcgcctcgctgcacaatgccaacgaa
attgagcggttggatttacgcatcaatgacgtagtgtttgtggaaaaaggtggtgagatc
attcccaaaatcacagggatcgatgccgaacagcgacccgagcgattgacgttttccatt
acataccctacacgttgtcccgaatgcggaaccgagctcgtacgtaaggagaccgaagcc
aaccattattgtcccaatgagcgcgggtgtccgccgcagttgcgcggcaaagtggagcac
tttattcaccgcaaagctcttaatatcgacagcttgggcgagggaaaaatcgagctgctg
tttgacaaaaacctggtgcaaaccccggccgatctgtacgacctgacctacgaaaagctg
tttggactggaaaaagtcatcaccgacgaagaaacgggcaaaaccaagaaaataggcttt
aaggaaaagaccgtcgaaaatatcctgaaaggccttgagcagtcaaaactggcccctttc
aaacaggtgctgttcggcattgggattcgttttgtgggtgccacggtggccgaaaaactg
gcggcttatttccgaaacattgacgccctgatggcggccgattatgcgtccctctgcaac
gtgcccgaaatcggcggtaagatcgcccaaagcgtcgtggattattttgccgatgcagaa
aaccgaaactatatcgaacgcttacgggcggcagggctgcaatttgaaaccgacactatc
cccgtcgtggcggaatccaacgcactggaaggaaaaagctttttgtataccggcacgttt
gccggcatgacccgcgaagaactggaagctaagatcgaagccaacggcggcaaactgctc
agcggcgtatcggccaaactcaactacctgattgtgggtgaaaaacccggggcatccaag
ctggataaggccaaccgactcaacgtaaaattgatctcggaggaggagtttttggggatg
ctgggctga
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