KEGG   Runella slithyformis: Runsl_3366
Entry
Runsl_3366        CDS       T01553                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rsi  Runella slithyformis
Pathway
rsi03030  DNA replication
rsi03410  Base excision repair
rsi03420  Nucleotide excision repair
rsi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rsi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Runsl_3366
   03410 Base excision repair
    Runsl_3366
   03420 Nucleotide excision repair
    Runsl_3366
   03430 Mismatch repair
    Runsl_3366
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rsi03032]
    Runsl_3366
   03400 DNA repair and recombination proteins [BR:rsi03400]
    Runsl_3366
Enzymes [BR:rsi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Runsl_3366
DNA replication proteins [BR:rsi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Runsl_3366
DNA repair and recombination proteins [BR:rsi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Runsl_3366
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Runsl_3366
   MMR (mismatch excision repair)
    DNA ligase
     Runsl_3366
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Runsl_3366
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 BRCT_2 PTCB-BRCT HHH zf-C4_Topoisom Auto_anti-p27 zf-ribbon_3 zf-ACC
Other DBs
NCBI-ProteinID: AEI49732
UniProt: A0A7U3ZM47
LinkDB
Position
3921801..3923909
AA seq 702 aa
MTKLPNEPMHNPADRITELTDLLNYFNHRYYQDSVSEVSDYEFDILLQELTDLESRHPDL
RRDDSPTLRVGGSITKNFATVYHRYPMLSLGNTYNEQDLRDFDERVRKGLYGEAYEYVCE
LKFDGISLSMTYENGVLKRAVTRGDGTRGDDITGNVRTIKTLPLKIRSEEQGAGAFPAVF
EVRGEGFMPISSFEKLNKDLEAADEPTYANPRNAASGAFKLQDSAESARRGLDCYLYAFM
SDEVFFETHEQSLLTLKQWGFNVSPSWRKCADMDEVLAYIHEWETKRHTLPLATDGIVIK
INSIAQQRELGFTAKSPRWAIAFKYKAENKAGVLKSVSYQVGRTGALTPVANLDNLNEDG
KGLQLSGTRVKRASLHNANEIERLDLRINDVVFVEKGGEIIPKITGIDAEQRPERLTFSI
TYPTRCPECGTELVRKETEANHYCPNERGCPPQLRGKVEHFIHRKALNIDSLGEGKIELL
FDKNLVQTPADLYDLTYEKLFGLEKVITDEETGKTKKIGFKEKTVENILKGLEQSKLAPF
KQVLFGIGIRFVGATVAEKLAAYFRNIDALMAADYASLCNVPEIGGKIAQSVVDYFADAE
NRNYIERLRAAGLQFETDTIPVVAESNALEGKSFLYTGTFAGMTREELEAKIEANGGKLL
SGVSAKLNYLIVGEKPGASKLDKANRLNVKLISEEEFLGMLG
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgactaagctaccaaacgaacccatgcacaaccctgccgaccgcatcaccgaactgacc
gatctcctcaattatttcaaccaccgctactatcaggacagcgtatcggaagtcagtgat
tatgagtttgatatactcctgcaggaacttacagacttagaaagtcgtcaccccgacctg
cgtcgcgacgactcgcctacgctgcgggtgggaggaagcattacgaagaattttgcgacg
gtataccaccgctatccgatgctgtcgctgggcaatacctacaacgaacaggatctccgc
gactttgatgagcgcgtgcggaaggggctctacggtgaagcctacgagtatgtgtgtgag
ctcaaatttgacggtatatcgctcagcatgacctacgaaaacggcgtattgaagcgggcc
gtgacgcgcggcgacggcacccggggcgatgatattacgggcaatgttcggaccatcaag
accctgccgctgaaaatcaggagcgaggagcagggagcaggggcctttccggccgtcttc
gaggtgcgcggcgaagggtttatgcctatctcgtcgtttgaaaaactcaacaaagacctg
gaagcggccgatgagcccacctacgccaatcctcgcaatgccgcttccggagcgtttaaa
ttgcaggattcagccgaatcggcgcggcgggggttggattgttatctgtacgcgtttatg
tcggatgaggtcttttttgaaacccacgagcaaagcttactgacgctcaaacaatggggc
ttcaacgtgtcgccgagttggcgaaaatgtgccgatatggacgaagtgctggcctatatt
cacgaatgggaaaccaaacgtcatacattgccgctggcgaccgacggcattgtgatcaaa
attaattcgattgcccaacagcgtgaattaggcttcacggccaaaagtccgcgttgggcc
attgcgtttaaatataaggcggaaaataaggccggtgtgttgaaatccgtctcgtatcag
gtaggccgtacgggggcactcacgcccgttgccaatttggacaatcttaacgaagacggc
aaaggcctgcaattgtcgggcacgcgggtaaaacgcgcctcgctgcacaatgccaacgaa
attgagcggttggatttacgcatcaatgacgtagtgtttgtggaaaaaggtggtgagatc
attcccaaaatcacagggatcgatgccgaacagcgacccgagcgattgacgttttccatt
acataccctacacgttgtcccgaatgcggaaccgagctcgtacgtaaggagaccgaagcc
aaccattattgtcccaatgagcgcgggtgtccgccgcagttgcgcggcaaagtggagcac
tttattcaccgcaaagctcttaatatcgacagcttgggcgagggaaaaatcgagctgctg
tttgacaaaaacctggtgcaaaccccggccgatctgtacgacctgacctacgaaaagctg
tttggactggaaaaagtcatcaccgacgaagaaacgggcaaaaccaagaaaataggcttt
aaggaaaagaccgtcgaaaatatcctgaaaggccttgagcagtcaaaactggcccctttc
aaacaggtgctgttcggcattgggattcgttttgtgggtgccacggtggccgaaaaactg
gcggcttatttccgaaacattgacgccctgatggcggccgattatgcgtccctctgcaac
gtgcccgaaatcggcggtaagatcgcccaaagcgtcgtggattattttgccgatgcagaa
aaccgaaactatatcgaacgcttacgggcggcagggctgcaatttgaaaccgacactatc
cccgtcgtggcggaatccaacgcactggaaggaaaaagctttttgtataccggcacgttt
gccggcatgacccgcgaagaactggaagctaagatcgaagccaacggcggcaaactgctc
agcggcgtatcggccaaactcaactacctgattgtgggtgaaaaacccggggcatccaag
ctggataaggccaaccgactcaacgtaaaattgatctcggaggaggagtttttggggatg
ctgggctga

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