Runella slithyformis: Runsl_3851
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Entry
Runsl_3851 CDS
T01553
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rsi
Runella slithyformis
Pathway
rsi03410
Base excision repair
rsi03430
Mismatch repair
rsi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Runsl_3851
03430 Mismatch repair
Runsl_3851
03440 Homologous recombination
Runsl_3851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsi03400
]
Runsl_3851
DNA repair and recombination proteins [BR:
rsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Runsl_3851
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Runsl_3851
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Runsl_3851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF5817
Motif
Other DBs
NCBI-ProteinID:
AEI50209
UniProt:
A0A7U3ZN21
LinkDB
All DBs
Position
complement(4440587..4442332)
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AA seq
581 aa
AA seq
DB search
MIFVNLHSMTTKRWTYRQTLTPDQQAQADALAASINVNPFLGRLLVQRGITTFETAKAFF
RPAMEHLHDPFLMKNMDKAVARLLQAFEHKEKIIIYGDYDVDGATSVAMFYGFLKKYYPF
IEYYIPDRYIEGYGVSWQGIDYAEANGFSLIVTLDCGIKSAEKVADAKRRGIDFIICDHH
RPDTNLPPAVAVLDPKQEDCPYPYKELTGCGVGFKLLQALCQQGFADEADLMDQLDLLVV
SIAADIVHITGENRVLAAYGLKKLNERKRVGLNALIEIAGFRNALDITNVVFGLAPRINA
AGRIAHAKEAVRLLLCNDKYEAEAFAQEINKHNSDRRTFDTGITDEALNMIREDAWMVGA
NSTVLYKEDWHKGVVGIVASRCIEHFHRPTIILTNSHGKAAGSARSVPGFDVYEAIEACS
DLLEQFGGHTFAAGLSLSVDNVPAFRMRFDEIVKTRISPEQLTPLVDIDMDLELNAISAK
FYNILKQMAPFGPENMTPVFASHDVRMSGTPTIMKEKHLKIEVFQPSPQGAVKFTAIGFG
MADLYPKLISGKPFSIAYTIEENTFRDKTTLQLYLKDIRFE
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgattttcgttaatttgcactctatgacgaccaaacgctggacataccgacaaacccta
acgcccgatcaacaagcccaagccgacgcccttgccgcctccattaatgtcaatccgttt
ttgggaaggcttctggtgcagagaggcattacgacgtttgagaccgccaaagcttttttt
cgccctgccatggagcaccttcatgacccttttctgatgaaaaacatggacaaagcggtg
gcaagattgcttcaggcgtttgagcataaagaaaagatcatcatttacggcgattatgac
gtcgacggcgccacgtcggtggcgatgttttacggatttctcaaaaaatactatcctttc
atcgagtactatattcccgaccgctacattgagggctatggcgtttcgtggcagggcatt
gactacgccgaagccaacggattttccctcatcgtcacccttgactgcggcatcaaatcg
gccgagaaggtagccgatgccaaacgccgaggcattgattttatcatttgtgaccaccac
cggccggatacgaatttaccgccggccgtggccgttctggaccccaagcaggaagactgc
ccttatccatacaaagaactgacgggctgcggtgtaggatttaaactgttgcaggcgttg
tgccaacagggatttgccgatgaggccgatctgatggaccaattggacctgctggtggtc
agtattgccgctgacattgtacacatcacgggagaaaaccgcgttttggcagcctatggc
ctcaaaaaactcaatgaacgcaaacgcgtcgggctgaatgccctgatcgaaattgcgggc
tttcgcaatgcgctcgacatcaccaatgtggtcttcgggctggccccgcgcatcaatgcc
gccggccggatcgcccacgccaaagaagccgttcggttattgctctgcaacgataaatac
gaagccgaagcctttgcccaggaaataaataagcacaacagcgaccgccggacgtttgat
accggcatcaccgacgaagccctcaacatgattcgtgaagatgcctggatggtaggtgcc
aacagcactgtgctctacaaagaagattggcataaaggtgtggtgggcattgtagccagc
cgatgcatcgaacatttccaccgccccaccattattctgaccaattcgcacggcaaggcc
gcgggctcggcgcggtcggttccggggtttgacgtctacgaggccatcgaagcctgctcc
gatctgttggaacagtttggagggcatacgtttgcggccgggctttccttatccgtcgat
aacgtcccggcgttcagaatgcgttttgacgaaattgtcaaaacacgcatttctcccgaa
cagcttaccccgcttgtcgacattgacatggacctggaattgaacgccatcagcgctaag
ttttataatatccttaaacaaatggcacctttcggccccgaaaacatgacgcctgtattt
gccagtcatgacgtacggatgagtggtacacccaccattatgaaggaaaaacacctcaaa
attgaagtgtttcaaccaagcccgcagggagccgttaagtttaccgccatcggattcggc
atggcggatctctacccaaagctcatcagcggcaaacctttttccatcgcctataccatc
gaagaaaatacgtttcgggacaaaacgacgttacagttgtatttgaaagacattcgattt
gagtaa
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