KEGG   Rhodobacter sphaeroides KD131: RSKD131_0728Help
Entry
RSKD131_0728      CDS       T00844                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rsk  Rhodobacter sphaeroides KD131
Pathway
rsk03030  DNA replication
rsk03410  Base excision repair
rsk03420  Nucleotide excision repair
rsk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rsk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RSKD131_0728
   03410 Base excision repair
    RSKD131_0728
   03420 Nucleotide excision repair
    RSKD131_0728
   03430 Mismatch repair
    RSKD131_0728
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rsk03032]
    RSKD131_0728
   03400 DNA repair and recombination proteins [BR:rsk03400]
    RSKD131_0728
Enzymes [BR:rsk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RSKD131_0728
    6.5.1.6  DNA ligase (ATP or NAD+)
     RSKD131_0728
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     RSKD131_0728
DNA replication proteins [BR:rsk03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    RSKD131_0728
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     RSKD131_0728
DNA repair and recombination proteins [BR:rsk03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     RSKD131_0728
   NER (nucleotide excision repair)
    Other NER factors
     RSKD131_0728
   MMR (mismatch exicision repair)
    Other MMR factors
     RSKD131_0728
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: ACM00588
UniProt: B9KQ81
LinkDB All DBs
Position
1:complement(724910..726511)
Genome map
AA seq 533 aa AA seqDB search
MKRFAALFDLLDRTTRTSAKVAALADYFRTAPEEDRVWTIGLLSGRRPKRAVNTTELRSW
AAEASGLPVWLAEEVHPIVGDLAETISLLLPEPSQTSDRTLDGWMRELVSLTGRPAEVRR
AAILDAWDRLSTPERFLFNKLITGGFRMGVSQGLMTRALAQATGVDEAVLAHRLMGDWKP
GRIGFETLIGAHDPEADASKPYPFALASPVEEVAALGDPADWLAEWKWDGIRGQLVNRAG
AFALWSRGEELVTDRFPDLAPLRDFLPPGLVIDAEVLAWGGEGPLPFAALQKRIGRLTVP
KKILAEAPAHLLAYDLLEENGEDLRAAPLAHRRARLEAVLAALPPGVPISPSPLVAFDDW
ETLGGIRATAREKIAEGLMLKRASSPYFVGRKRGDWWKWKLDPYTVDAVMLYAQQGAGRR
ATLFTDFTFGVRDGDDLVPFTKAYSGLTDAEFRQITDWVRKNTLERFGPVRRVPPELVFE
LAFEGIQASPRHKSGIALRFPRMVRWRKDKPAAEIDTLESLRELLAATGGAAP
NT seq 1602 nt NT seq  +upstreamnt  +downstreamnt
atgaagcggttcgcggccctcttcgacctgctcgaccgcacgacgcgcacctccgcgaag
gtggcggcgctcgccgactatttccgcaccgcgcccgaggaggaccgggtctggaccatc
ggcctcctctcgggccgccgccccaagcgggcggtgaacacgaccgaactgcgcagctgg
gcggccgaggcatcgggtctgccggtctggctcgccgaggaggtccatccgatcgtgggc
gatctggccgagacgatctcgctcctcctgcccgagcccagccagaccagcgaccgcacg
ctagacggctggatgcgcgaactggtttccctcacaggccgacccgccgaggtgcgccgg
gccgccatcctcgacgcctgggacaggctcagcacgcccgagcggttcctcttcaacaag
ctcatcaccggcggtttccgcatgggcgtgagccaagggctgatgacgcgcgcgctggcg
caggcaaccggcgtcgacgaggcggtgctggcgcaccggctgatgggcgactggaagccc
ggccggatcgggttcgagacgctgatcggcgcgcacgatcccgaggccgatgcctcgaaa
ccctatccgttcgcgctcgcctcgccggtcgaggaggtggcggcgctgggagatcccgcc
gactggcttgcggaatggaaatgggatggcatccgcggccagctcgtgaaccgcgcgggc
gccttcgcgctctggtcgcgcggcgaggagctggtgacggaccgtttccccgatctggcc
ccgctccgggatttcctgccccccggcctcgtgattgatgccgaggtgctggcctggggc
ggcgagggccccctccccttcgccgcgctccagaagcggatcggccgcctgaccgtgccg
aagaagatcctcgccgaggcgcccgcgcatctgctggcctacgatcttctggaggaaaac
ggcgaggatctgcgcgcggccccgctcgcgcaccgtcgcgcccggctcgaagcggtgctg
gcagccctgcccccgggcgtgccgatctcgccctcgccgctggtggccttcgacgactgg
gagacgctgggcgggatccgcgccacggcgcgcgagaagatcgccgaggggctgatgctg
aagcgcgcctcctcgccctatttcgtcggccgcaaacggggcgactggtggaaatggaag
ctcgatccctacacggtcgatgcggtcatgctctatgcccagcagggggcggggcgacgg
gccacgctcttcaccgacttcaccttcggcgtgcgcgacggcgacgatctcgtgcccttc
accaaggcctattccggcctcaccgatgccgagttccgccagatcaccgactgggtgcgg
aagaacacgctggagcggttcggacccgtccggcgcgtcccgcccgagctggtcttcgag
ctggccttcgagggcattcaggccagcccccgccacaagtcgggcatcgcgctccgcttc
ccgcgcatggtgcgctggcggaaggacaagcccgcagccgagatcgacacgctcgaaagc
ctgcgcgagctgctcgcagcgacgggcggggcggccccatga

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