KEGG   Rhodobacter sphaeroides KD131: RSKD131_0994Help
Entry
RSKD131_0994      CDS       T00844                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rsk  Rhodobacter sphaeroides KD131
Pathway
rsk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rsk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RSKD131_0994
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rsk03400]
    RSKD131_0994
Enzymes [BR:rsk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RSKD131_0994
DNA repair and recombination proteins [BR:rsk03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RSKD131_0994
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ACM00854
UniProt: B9KRR2
LinkDB All DBs
Position
1:complement(1000707..1003340)
Genome map
AA seq 877 aa AA seqDB search
MSRQEPPMPANPRQDLDRYRAKRDFARTPEPQGRSEAPRPEAESLSFVVQKHAASRLHWD
FRLEWNGVLLSWAVTRGPSPDPSARRLAVRTEDHPLDYAEFEGTIPKGEYGGGTVMLWDR
GTWEPQGDFAEGLRTGQLKIRLAGERMRGRWTLVRMKPRPREKAENWLLIKEHDVHESAQ
TEELVERHMTSVATGRTMEQIAAGKAPPRRTRKAALPAFRPLQLARLVSAAPEGEDWIHE
TKFDGYRCLAALAGGRARLYTRSGLDWTAKFGALVEDIEALEAQEALIDGEVIAPGREGG
SFSELQARLKSGGQLLFMAFDLLALDGEDLTGQPLLARKERLETLIGKGRGAVRFSGHIR
GHGPEVHERICAAGLEGIVSKRASAPYAGSRNGDWLKVKCTHRQEFVICGWNASDKPGRP
FASLVMGSYEKSRLVYRGSVGSGFGAPLFRELKPLLAERAQGACPFGRTPAKAKGAHWLK
PELVAEVSFTELTAEGHIRHGVFAGLRSDKDAREVRLEKPAPEKPAPRPRKARAGKKGTK
TARPDAPSPDEPAPEPARKHRKSGGEKKETTMARPDDLRVAGIRISHPDRRIYDRPAVTK
REVAEHAEALAPRMLRFLKDRPVSLLRCPDGAAGECFFQKHRTRGMPVAMKTVPVETKSG
LEDFITLPDVAALVGATQMGTLEFHIWGSRNRSLQRPDRLVFDLDPDESLDFAHVRTAAA
ELRGLLTDLGLPSVPMLSGGKGVHVIVPLKPKAEWESVKLFSRALATHLAQEAPDRYTAT
MAKAGRKGRIFIDWLRNDRGSTAIAPYSLRARPGAPVATPVDWDELASARSGGDWTIRSI
RDRLDRPCPLAEASARPATLGRTVIGRLERLVAGGKP
NT seq 2634 nt NT seq  +upstreamnt  +downstreamnt
atgagccgtcaggagccgccgatgcccgccaacccgcgacaggatctcgaccgctaccgc
gccaagcgcgacttcgcgcgcacgcccgagccgcagggccgttccgaggcgccgcgcccc
gaggcggagagcctgtccttcgtcgtgcagaaacatgcagcctcccggctgcactgggat
ttccggctggaatggaacggtgtcctgctgagctgggccgtgacgcgcggcccctcgccc
gatccgtccgcccgcaggcttgcggtgcgaaccgaggatcatccgctggattatgccgag
ttcgagggaacgatccccaagggcgaatatggcggcggcacggtcatgctctgggaccgg
ggcacctgggaaccgcagggcgactttgcggaggggctgcggaccggtcagctcaagatc
cgcctcgcgggcgagcggatgcgcggccgctggacgctggtgcgcatgaaacccaggccg
cgcgagaaggccgagaactggcttctcatcaaggagcacgacgtgcacgagagcgcgcaa
accgaggagctggtcgagcggcacatgacctctgtcgcaacggggcggaccatggagcag
atcgccgccggcaaggcgccaccgcggcgcacgcgcaaggctgccctgcccgccttccgg
ccgctccagctcgcgcgtctcgtttcggcggcgcccgagggagaggactggatccacgag
accaagttcgacggctaccgctgcctcgcggccctcgcgggaggccgagcccgcctctac
acccgctccggcctcgactggacggccaagttcggcgccctcgtcgaggatatcgaggcg
cttgaggcccaggaggcgctgatcgacggcgaagtgatcgcgccgggccgggagggcggc
tccttttcggagctgcaggcacggctgaaatcggggggccagctcctcttcatggccttc
gaccttctggccctcgacggcgaggacctgaccggacagccccttctcgcgcggaaggag
cggctggagacgctgatcggcaaggggcgcggcgcggtgcgcttctcgggccacatccgc
ggccacggccccgaggtgcacgagcgcatctgtgcggcaggcctcgaagggatcgtctcg
aagcgggcctccgcgccctatgcgggcagccggaacggcgactggctgaaggtgaaatgc
acgcaccggcaggagttcgtgatctgcggctggaacgcctcggacaagccgggccgtccc
ttcgcctcgctggtgatgggcagctacgaaaagagccgtctggtctaccgcggcagtgtc
ggcagcggtttcggcgcccccctcttccgagagttgaagccgctcctcgccgagcgggca
caaggcgcctgccccttcggccgcacgccggccaaggccaagggtgcgcactggctgaag
cccgagctggtggccgaggtgagcttcaccgaactgacggcggaggggcacatccggcac
ggggtcttcgccggtcttcggagcgacaaggacgcgcgcgaggtgcggctcgagaagcct
gcgcccgaaaagcccgcgcccaggccccggaaggcgcgcgcagggaagaaggggacgaag
acggcccggccagacgccccctcacccgacgagcccgcccccgagcctgcccggaaacac
cgcaagtcgggcggggagaagaaggagacgacgatggcccgacccgacgacctgcgcgtc
gcaggcatccgcatcagccaccccgaccggcggatctacgaccggcccgccgtcacgaag
cgcgaggtggcggagcatgccgaggcactggcgccgcggatgctgcgcttcctgaaggat
cgtcccgtctcgctcctgcgctgcccggacggggcggcgggggagtgcttcttccagaag
caccgcacccgcggcatgcccgtcgcgatgaagacggtgcccgtcgagacgaaatcgggt
ctcgaggatttcatcaccctgcccgatgtcgcggctctggtcggggccacgcagatgggg
acgctcgaattccacatctggggctcgcgcaaccgcagccttcagcgaccggaccggctg
gtgttcgatctcgaccccgacgagagtctcgacttcgcccatgtgcggaccgcggcggcc
gagctgcgcggtctgctcacggacctcggcctgccctcggtgccgatgctctccggcggc
aagggggtgcatgtgatcgtgccgctgaagcccaaggccgaatgggagagcgtgaagctc
ttctcgcgggcgctcgccacccatctggctcaggaggcgcccgaccgctacacggccacg
atggccaaggccgggcgcaagggccggatcttcatcgactggctgcggaacgaccgcggc
tcgacggcgatcgctccctacagcctgcgcgcccgcccgggcgcgccggtggcgacgccg
gtcgactgggacgagctggcctcggcccggtcgggcggcgactggacgatccgctccatc
cgcgaccggctcgaccggccctgcccgctggccgaggcctccgcccggcccgcgacactg
ggtcggaccgtgatcgggcggctcgagcgacttgtggcaggagggaaaccatga

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