Ralstonia pseudosolanacearum GMI1000: RSc1115
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Entry
RSc1115 CDS
T00071
Symbol
recJ
Name
(GenBank) probable single-stranded-dna-specific exonuclease protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso03410
Base excision repair
rso03430
Mismatch repair
rso03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RSc1115 (recJ)
03430 Mismatch repair
RSc1115 (recJ)
03440 Homologous recombination
RSc1115 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rso03400
]
RSc1115 (recJ)
DNA repair and recombination proteins [BR:
rso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RSc1115 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RSc1115 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RSc1115 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
CAD14817
UniProt:
Q8Y0C9
LinkDB
All DBs
Position
complement(1170912..1172609)
Genome browser
AA seq
565 aa
AA seq
DB search
MTRIAIRPHSAETASLLAGHGIHPILARILAARGVARPSELSTELTDLLPPAQLKGIDDA
ARYLADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEI
VALAARERPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPG
CGFPSKHLAGVGVMFYVLLALRAELRNRGAFTPQNQPRLDALLDLVALGTVADVVRLDAN
NRLLVAQGLKRMRAGRMCAGIAALFRVAGREARRASTFDLGFGLGPRLNAAGRLADMSLG
IECLLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMAILASTLAGMDGAGRHTIAVYN
ETWHQGVIGIVASRLKDKFHRPVITFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGL
IVKFGGHAMAAGLSLHADGFDRFVETFEAVGREWLDESLLSRVLETDGEAEAECFTPQFV
ELLETHVWGQGFPAPSFCGEFDVLSQAVLKDKHLKLQLGRGKQRFDAIWFNHAEPLGASA
YVAYRLDNNTFNGITRVQMVIEHAQ
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcatcgccatccgtccgcattccgccgagaccgccagcctgctggccggccac
ggcatccatcccatcctggcgcgcatcctggccgcgcgcggcgtggcccgacccagcgaa
ctgtcgaccgaactgaccgacctgctgccgcccgcgcagctcaagggcatcgacgacgcg
gcgcgctacctggccgacgcgatcgccgccggcaagcgcctgctgatcgtcgccgactac
gactgcgacggcgccaccgcctgcgcggtcggcgtgcgcgggctgcgcatgctgggcgcg
caggtcggctacatcgtgcccaaccgcttcgagtacggctacggcctgtcgcccgagatc
gtcgcgctggccgcgcgcgagcggccggacgtgctcgtcaccgtcgacaacggcatcgcc
gacgtggcgggcgtggcggcggccaacgcgctgggcatcgacgtcgtcgtcaccgatcac
cacatgccgggcgcgcagttgcccgaggcccgcgtgatcgtcaacccgaaccagccgggc
tgcggctttccgagcaagcacctggcgggcgtgggcgtgatgttctacgtgttgctggcg
ctgcgggccgagctgcgcaaccgcggcgccttcacgccgcagaaccagccacgcctcgac
gcgctgctcgacctggtggcgctcggcaccgtggccgacgtggtccggctcgatgccaac
aaccggctgctggtggcgcagggcctcaagcgcatgcgcgcgggccggatgtgcgccggc
atcgcggcgctgttccgcgtggccgggcgcgaggcgcggcgcgcatccaccttcgacctc
ggcttcggcctgggcccgcgcctgaacgccgccggccgcctggccgacatgtcgctcggc
atcgaatgcctgctgaccgatgatttcgaccgcgccatggccatcgccgccgagctcgac
ggcatgaaccgggagcgccgcgaaatcgaggccggcatgcagcaggaggccatggcgatc
ctcgcgtccacgctggccggcatggacggcgccggccgccacaccatcgccgtctacaac
gagacctggcaccagggcgtgatcggcatcgtcgcctcgcggctcaaggacaagttccac
cggccggtgatcaccttcgcgccgggcgacgacggcgtcatcaagggctcgggccgctcc
atccccggcttccacctgcgcgatgcgctggacgccgtgcacaagcgctgccccgggctg
atcgtcaagttcggcggccacgcgatggcggccgggctgtcgctgcatgcggacggcttc
gaccgctttgtcgagaccttcgaggcggtcggccgcgaatggctggacgagtccctgctc
tcgcgggtgctcgaaaccgacggcgaggccgaagcggagtgcttcacgccgcagttcgtg
gagctgctcgaaacccacgtctggggccagggctttccggcgccgagcttctgcggcgag
ttcgacgtgctgtcgcaagccgtgctcaaggacaagcacctgaagctgcagctcgggcgc
ggcaagcagcgcttcgacgcgatctggttcaaccacgccgaaccgctcggcgcctcggcg
tacgtggcctaccggctggacaacaacaccttcaacggcatcacccgcgtgcagatggtg
atcgagcacgcgcagtag
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