KEGG   Ralstonia pseudosolanacearum GMI1000: RSc1115
Entry
RSc1115           CDS       T00071                                 
Symbol
recJ
Name
(GenBank) probable single-stranded-dna-specific exonuclease protein
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rso  Ralstonia pseudosolanacearum GMI1000
Pathway
rso03410  Base excision repair
rso03430  Mismatch repair
rso03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rso00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    RSc1115 (recJ)
   03430 Mismatch repair
    RSc1115 (recJ)
   03440 Homologous recombination
    RSc1115 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rso03400]
    RSc1115 (recJ)
DNA repair and recombination proteins [BR:rso03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     RSc1115 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     RSc1115 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RSc1115 (recJ)
SSDB
Motif
Pfam: DHHA1 DHH RecJ_OB Glyco_transf_4
Other DBs
NCBI-ProteinID: CAD14817
UniProt: Q8Y0C9
LinkDB
Position
complement(1170912..1172609)
AA seq 565 aa
MTRIAIRPHSAETASLLAGHGIHPILARILAARGVARPSELSTELTDLLPPAQLKGIDDA
ARYLADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEI
VALAARERPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPG
CGFPSKHLAGVGVMFYVLLALRAELRNRGAFTPQNQPRLDALLDLVALGTVADVVRLDAN
NRLLVAQGLKRMRAGRMCAGIAALFRVAGREARRASTFDLGFGLGPRLNAAGRLADMSLG
IECLLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMAILASTLAGMDGAGRHTIAVYN
ETWHQGVIGIVASRLKDKFHRPVITFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGL
IVKFGGHAMAAGLSLHADGFDRFVETFEAVGREWLDESLLSRVLETDGEAEAECFTPQFV
ELLETHVWGQGFPAPSFCGEFDVLSQAVLKDKHLKLQLGRGKQRFDAIWFNHAEPLGASA
YVAYRLDNNTFNGITRVQMVIEHAQ
NT seq 1698 nt   +upstreamnt  +downstreamnt
atgacccgcatcgccatccgtccgcattccgccgagaccgccagcctgctggccggccac
ggcatccatcccatcctggcgcgcatcctggccgcgcgcggcgtggcccgacccagcgaa
ctgtcgaccgaactgaccgacctgctgccgcccgcgcagctcaagggcatcgacgacgcg
gcgcgctacctggccgacgcgatcgccgccggcaagcgcctgctgatcgtcgccgactac
gactgcgacggcgccaccgcctgcgcggtcggcgtgcgcgggctgcgcatgctgggcgcg
caggtcggctacatcgtgcccaaccgcttcgagtacggctacggcctgtcgcccgagatc
gtcgcgctggccgcgcgcgagcggccggacgtgctcgtcaccgtcgacaacggcatcgcc
gacgtggcgggcgtggcggcggccaacgcgctgggcatcgacgtcgtcgtcaccgatcac
cacatgccgggcgcgcagttgcccgaggcccgcgtgatcgtcaacccgaaccagccgggc
tgcggctttccgagcaagcacctggcgggcgtgggcgtgatgttctacgtgttgctggcg
ctgcgggccgagctgcgcaaccgcggcgccttcacgccgcagaaccagccacgcctcgac
gcgctgctcgacctggtggcgctcggcaccgtggccgacgtggtccggctcgatgccaac
aaccggctgctggtggcgcagggcctcaagcgcatgcgcgcgggccggatgtgcgccggc
atcgcggcgctgttccgcgtggccgggcgcgaggcgcggcgcgcatccaccttcgacctc
ggcttcggcctgggcccgcgcctgaacgccgccggccgcctggccgacatgtcgctcggc
atcgaatgcctgctgaccgatgatttcgaccgcgccatggccatcgccgccgagctcgac
ggcatgaaccgggagcgccgcgaaatcgaggccggcatgcagcaggaggccatggcgatc
ctcgcgtccacgctggccggcatggacggcgccggccgccacaccatcgccgtctacaac
gagacctggcaccagggcgtgatcggcatcgtcgcctcgcggctcaaggacaagttccac
cggccggtgatcaccttcgcgccgggcgacgacggcgtcatcaagggctcgggccgctcc
atccccggcttccacctgcgcgatgcgctggacgccgtgcacaagcgctgccccgggctg
atcgtcaagttcggcggccacgcgatggcggccgggctgtcgctgcatgcggacggcttc
gaccgctttgtcgagaccttcgaggcggtcggccgcgaatggctggacgagtccctgctc
tcgcgggtgctcgaaaccgacggcgaggccgaagcggagtgcttcacgccgcagttcgtg
gagctgctcgaaacccacgtctggggccagggctttccggcgccgagcttctgcggcgag
ttcgacgtgctgtcgcaagccgtgctcaaggacaagcacctgaagctgcagctcgggcgc
ggcaagcagcgcttcgacgcgatctggttcaaccacgccgaaccgctcggcgcctcggcg
tacgtggcctaccggctggacaacaacaccttcaacggcatcacccgcgtgcagatggtg
atcgagcacgcgcagtag

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