KEGG   Rhodobacter sphaeroides ATCC 17025: Rsph17025_1218Help
Entry
Rsph17025_1218    CDS       T00512                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rsq  Rhodobacter sphaeroides ATCC 17025
Pathway
rsq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rsq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Rsph17025_1218
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rsq03400]
    Rsph17025_1218
Enzymes [BR:rsq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Rsph17025_1218
DNA repair and recombination proteins [BR:rsq03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Rsph17025_1218
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ABP70119
UniProt: A4WRV5
LinkDB All DBs
Position
complement(1260095..1262635)
Genome map
AA seq 846 aa AA seqDB search
MSEAARPQDLERYRARRDFARTPEPDGRTPEDRAGALRFVVQKHAARRLHWDFRLEWNGV
LLSWAVTRGPSADPSARRLAVRTEDHPIDYAGFEGTIPKGEYGGGTVMLWDRGTWEALDD
VNKGLSEGRLKFRLEGERMRGGWMLVRLKPRAGDKGENWLLIKEHDAHERPGPEGLVEAH
VTSVESGRRMEEIAEGRRPRQRRKPAAPPRFRPLQLARLVPAAPDGPDWLHETKFDGYRC
LAALADGKVRLHTRSGLDWTDKFGTLVPDLARLAVGRALIDGEVIAPGEASGAFSELQAR
LKTGGTLAFMAFDLLALDDEDLTGLPLLERKARLESLLEGETGAIHYSTHIRGHGPEVHE
RMCAAGQEGIISKRVEAPYSGTRNGDWLKVKCVLRQEFVICGWKASDKPGRPFASLVMGS
YETGRLTCRGAVGSGFDARTFRELKPLLAGRARATSPFGHVPEGAEGARWLRPDLVAEVT
FTELTRDGHIRHGVFAGLRDDKPARDVRLEAPEDALAEDAAPPKPPARAPREGRTNEDPM
PQADNDVRVAGIRISNPDRRIYERPAVTKREVAEHYEALGPRMLPFLRDRPVSLVRCPDG
AAGECFFQKHRTRGMPSAIRTVKVETKSGPEDYITLPDVPALVGAAQMGALEFHIWGSRN
RRLERPDRMVFDLDPDEGLDFARVREAAAELRVRLDDLGLPAVPMLSGGKGVHVIVQLKP
AAEWESVKLFTRALSTLLAEEAPDRYTAAMAKAGRKGRIFIDWLRNDRGSTAVAPYSLRA
RPGATVATPITWDELARARSAGDWTIRSIRERLEGPCPLAEARPVTLGRTVIGRLERLVT
QFKEGT
NT seq 2541 nt NT seq  +upstreamnt  +downstreamnt
atgtccgaagccgcgcgcccccaggatctcgaacgctaccgggccaggcgcgacttcgcc
cgcacgcccgagccggacggacgcacgcccgaggatcgcgcgggcgcgctccgcttcgtg
gtgcagaaacacgccgcccgccgccttcattgggacttccggctggaatggaacggggtg
ctgctcagctgggccgtcacgcgcgggccatcggccgacccgtccgcccgccgcctggcc
gtccgcaccgaggatcacccgatcgactacgccggcttcgagggcaccatccccaagggc
gaatatggcgggggcaccgtgatgctctgggatcgcgggacgtgggaggcgctcgacgac
gtcaacaaggggttgagcgagggccggctcaagttccgcctcgagggcgagcggatgcgc
ggcggctggatgctcgtgcgcctcaagccacgcgcgggcgacaagggcgagaactggctg
ctgatcaaggagcatgacgcgcacgaacggccggggcccgaggggctggtcgaggcccat
gtgacctctgtcgagagcggccgtcgcatggaggagatcgccgaggggcgcaggccgcgc
cagcgccgcaagccggccgccccgccccggttccggcccctccagcttgcgcgcctcgtg
ccggccgcgccggacgggccggactggctgcacgagacgaagttcgacggctatcgctgc
ctcgccgcgctcgcggacggcaaggtgcgcctccacacccgttcggggctggactggacg
gacaagttcggcacgctggtgcccgacctcgcgcgcctcgcggtcgggcgggcgctgatc
gacggcgaggtgatcgcccccggagaagcgagcggcgccttctccgaactgcaggcgcgc
ctcaagaccggggggacgctcgccttcatggccttcgacctgctggccctcgatgacgag
gatctgaccggcctgcccctgctggagcgcaaggcacggctcgagagccttctggaggga
gagacgggcgcgatccactactcgacccacatccggggccacggccccgaggtgcacgag
cggatgtgcgcggccgggcaggaggggatcatctcgaagcgggtcgaagctccctattcc
ggcacgcggaacggcgactggctcaaggtgaaatgcgtcctccgtcaggagttcgtgatc
tgcggctggaaggcgtcggacaagcccggccgccccttcgcctcgctcgtgatgggcagc
tacgagacgggccgcctgacctgcaggggcgcggtcggcagcggctttgacgcgcggacc
ttccgcgagctgaagcccctgctggccgggcgcgcgcgcgccacctctccgttcggccat
gtccctgagggggccgagggcgcgcgctggctgcgccctgatctggtggccgaggtgacc
ttcaccgaattgacgcgcgacgggcacatccgccacggcgtctttgcgggcctgcgcgac
gacaagcccgcccgcgacgtgcggctcgaggcgccggaggacgccttggccgaggatgca
gcccccccgaagccgccggcgcgcgcgccgcgcgaaggcaggacgaacgaggatcccatg
ccccaagccgacaatgacgtgcgggtggccggcatccgcatcagcaatcccgaccgcagg
atctatgagcggcccgccgtgaccaagcgcgaggtggccgagcattacgaggcgctcggc
ccgcggatgctgccgttcctgcgcgacaggccggtgtcgctggtgcgctgcccggacggc
gcggcgggcgagtgtttcttccagaagcaccggacccgcggcatgccctcggcgatccgc
accgtgaaggtcgagacgaagtccgggcccgaggattacatcaccctccccgatgtcccg
gccctcgtcggggcggcgcagatgggcgcgctcgagttccacatctggggatcgcgcaac
cgccgcctcgagcggccggaccggatggtcttcgacctcgatcccgacgagggcctcgac
ttcgcccgcgtgcgcgaggcggcagcagagctgcgcgtgcgtctcgacgatctgggcctg
cccgcggtgccgatgctgtcggggggcaagggcgtgcatgtgatcgtgcagctgaagccc
gcggccgaatgggagagcgtgaagctcttcacgcgcgcgctctcgaccctgctcgcggaa
gaggcgcccgatcgctacaccgccgcgatggcgaaggccggccgcaagggccggatcttc
atcgactggctgcgcaacgaccgcggctcgaccgccgtcgccccctacagcctgcgcgcg
cggcccggtgcaacggtggcgaccccgatcacatgggacgaactggcccgcgcccgctcg
gccggagactggacgatccgctcgatccgcgagcggctcgagggcccctgcccgctggcc
gaggcccgccccgtgacactcgggcggacggtgatcggccggcttgaacgactggtgacg
caattcaaggaggggacatga

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