KEGG   Rhinolophus sinicus (Chinese rufous horseshoe bat): 109436055Help
Entry
109436055         CDS       T04863                                 

Gene name
HDAC6
Definition
(RefSeq) histone deacetylase 6 isoform X1
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
rss  Rhinolophus sinicus (Chinese rufous horseshoe bat)
Pathway
rss05034  Alcoholism
rss05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rss00001]
 09160 Human Diseases
  09161 Cancers: Overview
   05203 Viral carcinogenesis
    109436055 (HDAC6)
  09165 Substance dependence
   05034 Alcoholism
    109436055 (HDAC6)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rss01009]
    109436055 (HDAC6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rss03019]
    109436055 (HDAC6)
   04131 Membrane trafficking [BR:rss04131]
    109436055 (HDAC6)
   03036 Chromosome and associated proteins [BR:rss03036]
    109436055 (HDAC6)
Enzymes [BR:rss01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     109436055 (HDAC6)
Protein phosphatases and associated proteins [BR:rss01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     109436055 (HDAC6)
Messenger RNA biogenesis [BR:rss03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     109436055 (HDAC6)
Membrane trafficking [BR:rss04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    109436055 (HDAC6)
Chromosome and associated proteins [BR:rss03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     109436055 (HDAC6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Motif
Other DBs
NCBI-GeneID: 109436055
NCBI-ProteinID: XP_019569857
LinkDB All DBs
Position
Unknown
AA seq 1157 aa AA seqDB search
MTSTGQDSTTTRQRRSRHNPHSPPHDSSVTSKRGAKKGAVLRSSPKLAEVKKKGRMKKLS
QETGQDLIVGLQGLDLNLEAKTLSGTGLVFDEQLNEFHCLWDDSFPEGPERLHAIKEQLI
QEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRILADTYDSVYLHPNS
YTCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQ
KHGIQRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQG
QGYTINVPWNQVGMRDADYIAAFLQILLPVTLEFQPQLVLVAAGFDALQGDPKGEMAATP
AGFAQLTHLLMGLAGGRLILSLEGGYNLRSLAEGVSASLHTLLGDPCPLLESPGAPCPSA
QLSLSCTLEALEPFWEILVRSDETLEEDSVEGSTAEEAEEEERPWQPPVPPGLTWPVLQA
RTGLVYDQRMMGHYNLWDNHHPEMPQRVSQIMCRLEELGLAERCLILPTRPATDAELLTC
HSAEYVGRLRATEKMKTRELHREGASFDSIYICPSTFACAKLATGATCCLVEAVLAGEVL
NGVAVVRPPGHHAEQDAACGFCFFNSVAVAARHAQAISGHALRILIVDWDIHHGNGTQHI
FEEDPSILYISLHRYDHGTFFPMGDEGASNQVGWAAGMGFTVNVAWNGPRMGDAEYLAAW
HRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQLSPEGYAHLTHLLMGLASGRIILILE
GGYNLTSISESMAACTRTLLGDPPPVLTLPRPPLSGALASIAETIQVHRRYWRSLRVMKV
KDKEGTSSSKLITKEALQPANPGSAEGLTTLEGNILDTSMGKTTLASSVQESTPPQTKSE
AAVADLTQDQSSEAAMPDPTTSEAAXXXXTTSEAAMPDPTTSEGAMQDPTTSEEAVGGAE
LIQTCPASCTDNQTPPASPVQGATPQSSPTKLTGILRILELDNKAQGSPESQIPGEERLL
GEAAGGQDVDDSVLMQVIGDTDQAMFYAVTPLPWCPHLAAVCPIPEAGLDVTQPCQDCGA
FQENWVCLSCYEVYCSRYVNAHMLQHHEASGHPLVLSYVDLSTWCYQCQAYVHHQTVLDV
KNIAHQNKFGEDMPHSH
NT seq 3474 nt NT seq  +upstreamnt  +downstreamnt
atgacctccaccggtcaggattccaccacaaccaggcagcgaaggagtaggcacaacccc
cactcgcccccccacgactccagcgtcacctcgaagcgaggtgctaagaagggtgccgta
ctccgctccagccccaaactagcggaggttaagaagaaaggcagaatgaagaagctcagc
caagaaacagggcaagacctaatcgtgggcctgcaagggctggatctgaaccttgaggcc
aagacactgtctggtactggcttggtgttcgatgagcagctaaatgaattccactgcctc
tgggatgacagcttcccggaaggccctgagcggctccatgccatcaaggagcagctgatc
caggaaggcctcctggaccgctgtgtgtcctttcaggcccggttcgccgaaaaggaagag
ctgatgttggttcacagcctcgaatacattgatctgatggagacgactcaatacatgaat
gagggagaactccgcatcctagcagacacctatgactcagtttacctgcatccgaactca
tacacctgtgcctgcctggcctcaggctccgtcctcaggctggtggatgcagtcctgggg
gctgagatccggaacggcatggccatcatcaggcctcctggacaccatgcgcagcacagt
cttatggatggatattgcatgttcaaccatgtggccgtggctgcccgctatgctcaacaa
aagcatggcatccagagggtccttatcgtggattgggatgtacaccatggtcaaggaaca
cagttcacctttgaccaggaccccagcgtgctctatttctccatccaccgctacgagcag
ggtcggttctggccgcacctcaaagcctctaactggtccaccacaggatttggccaaggt
cagggatacaccataaatgtgccttggaaccaggtggggatgcgagatgccgactacatt
gctgctttcctgcaaatcctgctgccggtcacccttgagttccagccccagctggtcctg
gtggccgctggatttgatgccctccaaggggaccccaagggcgagatggccgccactccg
gcagggttcgcccagctaacccatctgctcatgggtctggcaggaggcaggctgatcctg
tctctggagggtggctacaacctccgttccctggctgagggcgtcagcgcctcgcttcac
accctcctgggagacccttgccccctgctggaatcccctggcgccccctgcccaagtgcc
cagttgtcactgtcctgcactctggaagctctggagcccttctgggagatccttgtgaga
tcagatgagaccctggaggaggacagcgtggaggggagcactgcggaggaagcggaggag
gaggagaggccgtggcagccccctgtgcccccgggcctgacgtggccggtgctgcaggct
cggacggggctggtctatgaccaacggatgatgggtcactacaacttgtgggacaaccac
caccccgagatgccccagcgcgtctcacagatcatgtgccgtctggaggagctgggcctt
gccgagcgctgcctcatcctgcccacacgtcccgccacggatgctgagctgctcacctgc
cacagtgctgagtatgtgggtcgtctacgggccacagagaagatgaaaacccgggagctg
caccgcgaaggtgccagctttgactccatctacatctgccccagcacctttgcctgtgca
aagctggccactggcgccacatgctgccttgtagaagctgtgctggcaggagaggttttg
aatggtgttgctgtggtgcgtcctccaggacaccatgcagagcaggacgctgcttgcggt
ttctgctttttcaattctgtggctgtggctgctcgccatgcccaggccatcagtgggcat
gcgctgcggatcctgatcgtggactgggacatccatcatggtaatggaactcagcacata
tttgaggaggaccccagcatactctacatttccctgcaccgctatgatcatggcaccttc
tttcccatgggagatgagggtgccagcaaccaggtgggctgggctgcaggcatgggcttc
accgtcaacgtggcctggaatgggccccgcatgggtgacgccgagtacctggctgcctgg
catcgtctggtgcttcccattgcctacgagtttaacccagaactggtgctagtctcagct
ggctttgacgcggcacggggggatccactggggggctgccagttgtcacctgagggctat
gcccacctcacccacctgctgatgggccttgccagtggccgcattatcctaatcctagag
ggtgggtataacctgacgtccatctcggaatccatggccgcctgtacccgcaccctcctt
ggggacccaccacctgttctgaccctgccacggcccccactatcaggggccctagcctca
atcgctgagaccatccaagtccatcgcagatactggcgcagcttgcgggtcatgaaggtg
aaagacaaggagggaacttccagttctaagttgatcaccaaggaagcactccaaccagcc
aatcctgggtcagccgaggggctgaccacactagaggggaatattctggacacaagcatg
gggaagaccaccttggcatcatctgtgcaagagtccactccaccccagaccaagtcagag
gcagctgtggcggacctcactcaggaccagtcctcagaggcagccatgccggacccgacc
acctcagaggcagccnnnnnnnnnnngaccacctcagaggcagccatgccggacccgacc
acctcagagggagccatgcaggacccgaccacctcagaggaggccgtgggaggagctgag
ctgatccaaacctgtccagcttcgtgcactgacaaccagactcctccagcctcacctgtg
caaggagccacacctcagagctcccccactaagcttactgggattctcaggatcttggaa
ctagacaacaaggctcaggggtccccagagtctcagatcccaggagaggagaggctacta
ggagaggcagctggaggtcaggacgtggatgattcagtgctgatgcaggtcattggggac
actgaccaggccatgttttacgctgtgacaccactgccgtggtgtccccatttggcggca
gtctgccccattcctgaagcaggcctggatgtgacccaaccctgtcaggactgtggagca
ttccaggagaactgggtgtgtctgtcttgctatgaggtctactgcagtcgttacgtcaat
gcccacatgctccagcaccatgaagcctcgggacacccgctggtcctcagctatgttgac
ctttctacctggtgttaccaatgtcaggcctatgtccaccaccagactgtcctagatgtg
aagaacatcgcccaccagaacaagtttggggaggacatgccccactcacactaa

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