KEGG   Rhinolophus sinicus (Chinese rufous horseshoe bat): 109447868Help
Entry
109447868         CDS       T04863                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
rss  Rhinolophus sinicus (Chinese rufous horseshoe bat)
Pathway
rss03410  Base excision repair
Module
rss_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:rss00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    109447868 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rss03400]
    109447868 (LIG3)
Enzymes [BR:rss01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     109447868 (LIG3)
DNA repair and recombination proteins [BR:rss03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     109447868 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 109447868
NCBI-ProteinID: XP_019588126
LinkDB All DBs
Position
Unknown
AA seq 1015 aa AA seqDB search
MTLAFKILFSPTLRALNQKELCLLRKQHLWPHIKHFSRWSDTDLFHGCCLLQKRKPVLSS
QEDDLRPRDTCLVFLPGSHVGLCRGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQ
HIADLSSKAASTPKKKAVVQAKLTATGQVTSPVKGASVVTNTNPRKFSGFSAKPNNSREA
HSSSVPKTSLSSSKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLQKGSAGDGF
HGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFE
QSKSFPPAAKSLLTIQEVDEFLLQLSRLTKEDEQQQALQDIAARCTANDLKCIIRLIKHD
LKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGRRRTLSVQASLMT
PVQPMLAEACKSIDYAMKKCPNGIFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVA
HFKDYIPQAFPGGHSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIY
FNGVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVAKASDLADMINRVIREGLEGLVL
KDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPN
SQKWCTVTKCSGGHDDATLARLQKELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKA
AVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKERADFT
VVAGDEGSSTTGGSSGENEGTLASAGSHKARTSPEQPCASTKKAGGKLSSPNSKGGHRVI
AKPAPVKVGEKLATKSSPVKVGEKRKAPDETPCQAKRRVLLDIFTGVRLYLPPSTPDFSR
LRRYFVAFDGDLVQEFDVASATHVLGSRAKNSEAQQVSPEWIWACIRKRRLVAPC
NT seq 3048 nt NT seq  +upstreamnt  +downstreamnt
atgactttggctttcaagattctcttctcaccaaccctccgtgcactcaaccaaaaagaa
ctgtgcctactccgaaaacaacatctctggccacacataaaacatttcagccggtggtca
gacacagatctgtttcatgggtgctgcctccttcagaaaagaaagcctgttctgtcatcc
caggaagacgatctaagaccacgtgacacctgccttgtcttcttgccagggtcgcatgtg
ggactctgccgtgggccctgtgagatggctgagcaacggttctgtgtggactatgccaag
cgtggcacagctggctgcaaaaaatgcaaggaaaagattgtgaagggtgtatgccgcatt
ggtaaagtggtgcccaatcccttctcagagtctgggggtgatatgaaagagtggtaccac
attaaatgcatgtttgagaaactggagcgggcccgggccaccacaaaaaaaattgaagac
ctcacagagctggaaggctgggaggaactggaagacaatgagaaggaacagataagccag
cacattgcagacttgtcttctaaagcagcaagcacaccaaagaagaaagctgttgttcag
gctaagctgacagccactggccaggtgacatcaccagtgaaaggtgcttccgttgttacc
aacaccaatcctcggaaattttctggcttttcagccaagcccaacaactcaagggaagcc
cactccagctctgtccctaagacaagtctgtcttcaagcaaatgtgaccccaagcacaag
gattgtctgctacgtgagtttcggaagctgtgtgccatggtggctgaaaatcctagctac
aacacgaagacccagatcatccaggacttccttcagaaaggctcagccggagatggtttc
cacggtgacgtgtacctaacagtaaagctgctgctgccgggtgttattaagagtgtttac
aacttgaatgataagcagatcgtgaagcttttcagccgcatttttaactgcaacccagat
gatatggcacgagacctagaacagggtgacgtgtcagagacaatcagagtcttctttgag
cagagcaagtctttccccccagctgccaagagcctccttaccatccaggaggtggacgag
ttcctcctgcagctgtccaggctcaccaaggaggatgagcagcaacaggccctgcaggac
atcgccgccaggtgcactgccaatgacctcaagtgcataatcaggttgatcaaacatgat
ctgaagatgaactcgggtgcaaaacatgtgttagacgccctcgatcccaatgcctatgaa
gccttcaaagcgtcacgcaacctgcaggatgtggtggagcgggtcctccgcaatgagcag
gaggtggagaaggagccaggccgcaggcggacgctaagcgtgcaggcctcactgatgacc
ccagtgcagcccatgctggccgaggcttgcaagtccatcgactatgcaatgaagaagtgt
cctaatggcatattctctgagatcaagtatgatggggagcgagtccaggtgcataagaac
ggggaccacttcagctacttcagccgcagtctcaagcctgtcctacctcacaaggtggcc
cactttaaggactacatcccccaggccttccctgggggccacagcatgatcctggactcc
gaggtgctcctaatagacaacaatacaggcaaaccgctgccctttgggactctgggggtg
cacaagaaagctgccttccaggatgctaatgtctgcctgtttgtttttgactgtatctac
ttcaatggtgtcagcttaatggacaggcctctgtgtgagcggcgcaagtttcttcatgat
aacatggttgaaattcccaaccggatcatgttctcagaaatgaagcgagtcgcgaaagct
tcagacttggccgacatgataaaccgggtgatccgagaggggctggaagggctggtgctg
aaggatgtgaagggtacatatgagcctggaaagcgacactggctgaaagtgaagaaagac
tatttgaacgagggggcaatggctgacaccgctgacctggtggtccttggggccttctat
gggcaagggagcaaaggtggcatgatgtccatcttcctcatgggctgctacgacccaaac
agccagaagtggtgcacagtcaccaagtgttcaggaggccatgacgatgccacacttgcc
cgcctacaaaaggagctggacatggtgaagatcagcaaggatcccagcaagatacccagc
tggctgaaagtcaacaagatctactatcctgacttcatcgtcccagacccaaagaaagct
gccgtgtgggagatcacaggggctgaattctccaaatcggaggctcacacagccgatggg
atctccatccgattccctcgctgcacccgaatccgtgatgataaggattggaaatctgcc
accaacctcccccaactcaaggaactgtaccagctatccaaggagagggcagacttcact
gtagtggccggagacgaggggagctccactacagggggcagcagcggcgagaacgagggc
accttggcatctgctgggtctcacaaggccagaacctcccctgagcagccctgtgccagc
acaaagaaggcaggggggaagctgagtagccccaacagcaaaggaggccacagggtgatt
gcaaagcctgcccctgtgaaagtgggcgagaagctggccacgaagtcttctcctgtgaaa
gtgggggagaagcggaaggctcctgatgagactccatgccaagccaagaggagggtgctg
ctggacatcttcaccggggtgcggctctacctgccgccctccacacccgacttcagccgt
ctcaggcgctactttgtagcattcgacggggacctggtccaggaatttgacgtggcctct
gccacacacgtgctggggagcagggccaagaactctgaggcccagcaggtctccccagag
tggatctgggcctgtatccggaaacggagactggtcgctccctgctag

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