KEGG   Rhodovulum sulfidophilum: NHU_00392Help
Entry
NHU_00392         CDS       T04143                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rsu  Rhodovulum sulfidophilum
Pathway
rsu03030  DNA replication
rsu03410  Base excision repair
rsu03420  Nucleotide excision repair
rsu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rsu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NHU_00392
   03410 Base excision repair
    NHU_00392
   03420 Nucleotide excision repair
    NHU_00392
   03430 Mismatch repair
    NHU_00392
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rsu03032]
    NHU_00392
   03400 DNA repair and recombination proteins [BR:rsu03400]
    NHU_00392
Enzymes [BR:rsu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NHU_00392
    6.5.1.6  DNA ligase (ATP or NAD+)
     NHU_00392
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NHU_00392
DNA replication proteins [BR:rsu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    NHU_00392
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     NHU_00392
DNA repair and recombination proteins [BR:rsu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NHU_00392
   NER (nucleotide excision repair)
    Other NER factors
     NHU_00392
   MMR (mismatch exicision repair)
    Other MMR factors
     NHU_00392
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID: BAQ67563
UniProt: A0A0D6AXB6
LinkDB All DBs
Position
complement(386352..387965)
Genome map
AA seq 537 aa AA seqDB search
MKRFAALFTALDRTTRTTAKVEALAAYLAEAPEPDRLWTVALLSGRRPRRAVTATRLREW
AAERAGLPLWLFEECYPVVGDLAETIALVLPPPVRDSDRSLSARMTDILAMARMDEPARK
AGILKAWDSLGGAERFLFTKLLTGGFRVGVSQTLMTRALARATGQDEAELAHRLMGDWTP
ATTSWQALIEAPDPAAALSRPYPFYLAYQIEASPEALGAPGDWIAEYKWDGIRGQLIARG
GVHFLWSRGEDLITGRFPELAVARDFLPAGTVLDGEILAWKDGRPLPFAALQTRIGRKTL
SKRLLAEAPAAFLAYDLLEDGGTDIRPRPLAERRARLEQIIAGMPPGGPLRLSQALPFDD
WEDLARTRGAARAAEAEGVMLKRADAPYLAGRRKGDWWKWKLDPLTVDAVMIYAQAGHGR
RATLYTDFTFAVWDGDGLVPVTKAYSGLTDAEFREITAWVRKNTLQRFGPVRQVAPELVF
EIAFEGIRASPRHKSGLALRFPRMLRWRRDKPAAEADRLDTLKALLGAVGGETTPGA
NT seq 1614 nt NT seq  +upstreamnt  +downstreamnt
atgaaacgcttcgccgcccttttcaccgcgctcgaccgcaccacccgcaccaccgccaag
gtcgaggcgctggccgcctatctggccgaggcgcccgaacccgaccggctctggaccgtg
gcgcttctgtcggggcggcggccgcgccgggctgtgacggcgacgcggctgcgggaatgg
gcggccgagcgggcgggcctgccgctctggctgttcgaggaatgctatccggtggtcggc
gatctggccgagaccatcgcgctggtcctgccgccgcccgtacgcgacagcgaccggagc
ctgtcggcgcgcatgaccgacatcctcgccatggcccggatggacgagcccgcccgaaag
gccgggatcctcaaggcctgggacagcctcggcggtgccgagcggttcctgttcaccaag
cttctgaccggcgggttccgtgtcggcgtcagccagaccctgatgacccgcgcgctggcc
cgcgccaccgggcaggacgaggccgagctggcgcaccggctgatgggcgactggacgccc
gcgacgacaagctggcaggccctgatcgaggcgcccgacccggcggcggcgctgtcgcgc
ccctatccgttctatctggcctatcagatcgaggcctcgcccgaggcgttgggcgcaccc
ggcgactggatcgccgaatacaaatgggacggcatccgcggccagctgatcgcgcgcggc
ggggtgcatttcctctggtcgcgcggcgaggatctgatcaccgggcggttccccgaactg
gccgtcgcccgcgatttcctgcccgcgggcaccgtgctggatggcgagatcctggcctgg
aaggacggccgccccctgccctttgccgcgcttcagacccggatcggccgcaagaccctg
tcgaaacggctgctggccgaggccccggccgcgtttctcgcctatgatctgctggaggac
ggcggcaccgacatccgtccccgcccgctggccgaacgccgcgcgcggctggaacagatc
atcgccgggatgccgcccggcgggccactgcgcctgtcgcaggccctgcccttcgacgac
tgggaggatctggcccggacccggggcgcggcacgcgcggccgaggccgaaggcgtgatg
ctgaaacgcgccgacgcgccctatctggccgggcgcaggaaaggcgactggtggaaatgg
aagctcgacccgctgaccgtcgacgcggtgatgatctatgcccaggcgggccacgggcgg
cgcgcgacgctttacaccgatttcaccttcgcggtctgggacggcgacgggctggtgccg
gtgaccaaagcctattccggcctcaccgatgccgaattccgcgagatcaccgcctgggtc
cgtaagaacacgcttcagcgcttcggcccggtgcggcaggtcgcgcccgagctggtcttc
gagatcgccttcgagggcatccgggccagtccgcgccacaaatcgggccttgccctgcgc
tttccccggatgctgcgctggcgccgcgacaagcccgcagccgaggccgacaggctcgac
accctgaaggcgctgctgggcgctgtcggcggcgagacgacgcccggcgcttga

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