Rhodovulum sulfidophilum: NHU_03528
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Entry
NHU_03528 CDS
T04143
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rsu
Rhodovulum sulfidophilum
Pathway
rsu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rsu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NHU_03528 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsu03021
]
NHU_03528 (rpoB)
03400 DNA repair and recombination proteins [BR:
rsu03400
]
NHU_03528 (rpoB)
Enzymes [BR:
rsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NHU_03528 (rpoB)
Transcription machinery [BR:
rsu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NHU_03528 (rpoB)
DNA repair and recombination proteins [BR:
rsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NHU_03528 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAQ70661
UniProt:
A0A0D6B6K8
LinkDB
All DBs
Position
complement(3660266..3664402)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQSYVGHKRLRKYYGKIHEVLEMPNLIEVQKSSYDLFLNSGDGPVPADGEGIQGVFQSV
FPIKDFNETAVLEFVRYELEKPKYDVEECQQRDMTFSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTQNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFSRIDRRRKLPVTTLLYALGLDQEGIMDAYYDTVSFRLER
NRGWVTRFFPERVRGTRPTYDLVDADTGEVICKAGDKVTPRQVKKLIEEGRVTELMVPFD
HIVGRYVAKDIINEETGAIYVEAGDELTWIVDKDGEVTGGSLKELLDAGITDIPVLDIDN
INVGPYIRNTMAADKNMGRDTALMDIYRVMRPGEPPTVEAATNLFESLFFDSERYDLSAV
GRVKMNMRLNLDAPDTQRTLRREDIISCIKALVELRDGKGEVDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATYAR
VNKYGFIETPYRRVEDGQVTDDVHYMSATEEMRHTVAQANANLDGEGKFINDLVNTRQSG
EYTMAPRESVDLIDVSPKQLVSVGASLIPFLENDDANRALMGANMQRQAVPLLQADAPFV
GTGIEQVVAQDSGAAIMARRGGIIDQVDAQRIVIRATEDLEPGDPGVDIYRLRKFQRSNQ
NTCINQRPLVKVGDTVQKDEVVADGPSTDMGELALGKNVIVAFMPWNGYNYEDSILISER
IARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDYGTVVEVRVFNRHGVDK
DERALQIEREEVERLARDRDDEQVILERNIYARLKSMVLGRVAVKGPKGVKPNSEITEEL
LETLSKGQWWQLALEDEADAGQVEALNSQFEAQKRALEHRFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVVSRVVPMEDMPFLADGTPVDLVMNPLGVPSRMN
VGQILETHMGWAARGLGQQVEEALHEYKRSGDLTPVRDAMHHAYGDDVYDEAIRDMDEAH
LVESASSVTRGVPIATPVFDGAKEQDINDALIRAGFDTSGQSELFDGRTGERFARKVTVG
VKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEDEE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagagctacgttggccacaaacgactccgcaaatactacggcaagatccacgaa
gttttggagatgccgaacctcatcgaggtccagaaatcctcttacgacctgttcctgaac
tccggcgacgggcctgtgcccgccgacggagagggcatccagggggtgttccagtcggtc
ttcccgatcaaggacttcaatgagacggccgtgctcgaattcgtgcgttacgagctcgag
aaaccgaaatacgatgtcgaggaatgccagcagcgcgacatgaccttctcggcgccgctc
aaggtgacgctgcgtctgatcgtgttcgatgtcgacgaggataccggcgccaagtcggtg
aaggacatcaaggagcaggacgtgttcatgggcgacatgccgctcatgacccagaacggg
accttcatcgtgaacgggaccgagcgggtgatcgtgtcccagatgcaccggagcccgggc
gtcttcttcgaccatgacaagggcaagacccattcctcgggcaagctgctcttcgcctgc
cggatcattccctatcgcggctcctggctcgacttcgaattcgatgccaaggatatcgtc
ttctcgcggatcgaccgccgccggaagctgccggtgacgaccctgctctatgcgctgggg
ctggatcaggaaggcatcatggatgcctattacgataccgtgtcgttccggctggaacgc
aatcgcggctgggtcaccaggttcttccccgaacgcgtgcgcggcacccgtccgacctat
gatctggtcgatgccgataccggcgaggtgatctgcaaggcgggcgacaaggtcacgccg
cgtcaggtcaagaagctgatcgaggaaggccgggtcaccgagctgatggtgccgttcgat
cacatcgtcggccggtatgtcgccaaggacatcatcaacgaagagaccggcgcgatctat
gtcgaggccggcgacgagctgacctggattgtcgacaaggatggcgaggtcaccggcggc
tcgctgaaagagctgctggatgcgggcatcaccgacatcccggtgctcgacatcgacaac
atcaatgtcggcccctacatccgcaacaccatggcggcggacaagaacatgggccgcgat
accgcgctcatggacatctaccgcgtgatgcgtccgggcgagccgccgaccgtcgaggcg
gcgaccaacctgttcgagtcgctgttcttcgattccgagcgctacgacctgtcggccgtc
ggccgggtcaagatgaacatgcgtctgaacctcgatgcgcccgacacccagcggacgctg
cgccgggaagacatcatctcctgcatcaaggcgctggtggaactccgcgacggcaagggc
gaggtcgatgacatcgaccacctcggcaaccgccgggtccgctctgtcggcgagctgatg
gagaaccagtaccgcgtcggcctgctgcggatggaacgcgccatcaaggagcggatgtcc
tcggtcgagatcgacacggtgatgccgcaggatctgatcaacgccaaaccggccgctgcc
gccgtgcgcgagttcttcggctcgtcgcagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtcacccacaagcgccgtctttcggcgctcgggccgggcggtctgacccgc
gagcgtgcgggctttgaggtccgcgacgttcacccgacccattatggccggatgtgcccg
atcgagacgccggaaggcccgaatatcggtctgatcaacagccttgccacctatgcgcgg
gtgaacaagtacggcttcatcgagaccccctatcgccgggtcgaggacgggcaggtgacc
gatgatgtccattacatgtccgcgaccgaggagatgcggcataccgtggcccaggccaac
gccaatctcgacggcgagggcaagttcatcaacgatctggtgaacacccgccagtccggc
gaatacaccatggcgccgcgcgaaagcgtcgacctgatcgacgtgtcgccgaagcagctg
gtgtcggtcggggcctcgctcattcccttcctcgagaatgacgacgccaaccgcgcgctg
atgggcgcgaacatgcagcgtcaggcggtgccgcttctgcaggccgatgcgcctttcgtc
ggcaccggcatcgagcaggtggtggcgcaggactcgggcgccgctatcatggcgcgccgc
ggcgggatcatcgaccaggtcgatgcccagcggatcgtgatccgggccaccgaggatctt
gaacccggcgatccgggcgtcgacatctaccgtctgcgcaagttccagcggtcgaaccag
aatacctgcatcaaccagcgtccgttggtgaaggtgggcgataccgtccagaaggacgag
gtcgtcgccgacggtccctcgaccgacatgggcgaactggcgctcggcaagaacgtgatc
gtcgcgttcatgccctggaacggctacaactatgaggactcgatcctgatctcggagcgc
atcgcgcgcgatgacgtcttcacctcgatccatatcgaggaattcgaggtcgcggcccgc
gataccaagctcgggccggaagagatcacccgcgacatcccgaacgtcggcgaggaggcc
ctgcgcaacctcgacgaggcgggcatcgtctatatcggcgccgaagtggggccgggcgac
atccttgtcggcaagatcactccgaagggcgaaagcccgatgacccccgaagaaaagctt
ctgagggccatcttcggcgaaaaggcctcggatgtgcgcgacacctcgctgcgtctgccc
ccgggcgattacggcaccgtggtcgaggtccgggtcttcaaccggcacggcgtcgacaag
gacgaacgtgcgctgcagatcgagcgcgaagaggtcgagcgtctggcccgtgaccgggat
gacgagcaggtgatcctcgagcgcaacatctatgcgcgtctcaagtcgatggtcctcggc
agggtcgcggtgaaggggccgaagggcgtgaagccgaattcggaaatcaccgaagagctg
ctcgagaccctgtccaaggggcaatggtggcaactggcgctggaggacgaggccgatgcc
ggccaggtcgaggcgctgaactcccagttcgaggcgcagaaacgcgcgctcgagcaccgc
ttcgaggacaaggtcgagaaggtccgccgcggcgacgatctgcctccgggcgtgatgaag
atggtcaaggtcttcatcgcggtgaagcgcaagcttcagcctggcgacaagatggccggt
cggcacggcaacaagggggtcgtctcccgcgtggtgccgatggaggacatgcccttcctg
gccgacggcacgcctgtcgacctggtgatgaacccgctcggtgtgccgtcgcggatgaac
gtggggcagatcctcgagacccatatgggttgggccgcgcgtggcctgggacagcaggtc
gaggaggcgcttcacgaatataagcgctcgggcgatctgacgccggtgcgggacgcgatg
catcacgcctatggcgacgatgtctatgacgaggcgatccgcgacatggacgaggcccat
ctggtcgaatccgcgtcctcggtcacccgcggcgtgccgatcgcgacgccggtcttcgac
ggtgccaaggagcaggacatcaacgatgcactgatccgtgcgggcttcgacacctcgggc
cagtccgagcttttcgacggcaggaccggcgagcgtttcgcccggaaggtcaccgtgggg
gtcaagtacctgctgaagctgcaccacctcgtggacgacaaaatccacgcgcgctcgacg
ggcccctacagtctcgtcacccagcagcccctgggcggcaaggcgcagttcggcggtcag
cgtttcggggagatggaggtctgggcgctcgaagcctacggtgccgcctataccctgcag
gagatgctgacggtgaagtcggacgatgtagcgggccggaccaaggtctacgagtcgatc
gtcaagggcgaggacaatttcgaggccggcgtgccggaatccttcaacgttctggtgaag
gaagtccgcggcctcgggctgaacatggaactcctggacgcggaggacgaggagtag
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