KEGG   Raphanus sativus (radish): 108805924
Entry
108805924         CDS       T06014                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH7
  KO
K08737  DNA mismatch repair protein MSH6
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    108805924
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rsz03400]
    108805924
DNA repair and recombination proteins [BR:rsz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     108805924
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_II AAA_29 RT_RNaseH_2
Other DBs
NCBI-GeneID: 108805924
NCBI-ProteinID: XP_018433419
UniProt: A0A6J0JEW8
LinkDB
Position
6:complement(9281421..9287228)
AA seq 1106 aa
MQRQKSILSFFQKPSPATQGPVSGDPTRGGGGLRSTAKVNSDASVRSVERNVPKPVEDDD
VRGVDTPPEKVPRRVLPSNFKAAAESAGGGGGASSLFSSIMHKFVKVDVPPERSGERNVA
APLRDSSVSVMPESVFPERRLNNAQPQDRDRISSFTGRDNLRSVEDEDVLGPDTPGTRPS
VPRLKRVLEDGMGFTENKVSLFDSNKRMKLFEDRICGEKKQVNEGTKFEWLEPSRIRDAN
RRRPDDPLYDRKTLYIPTDVFKKMSASQKQYWSVKSEYMDVVLFFKVGKFYELYEVDAEL
GHKELDWKMTMSGVGKCRQVGISESGIDDAVQKLLARGYKVGRIEQLETSDQTKARGSNT
IIPRKLVQVLTPSTASEGNLGLDPVHLLAIKEVKMELEKCSTVYGFAFVDCAALRFWVGS
ISDDASCAALGALLMQVSPKEVIYDSKGLSRETQQALRKYTLTGSTAVQLNPLPQQMGDA
DACGVRNMIESSGYFRGSSESWKSAVDGLTESGIALSALGELVNHLSRLKLEDVLKNGDI
HPYKVYSGCLRIDGQTMVNLEIFNNSCDGGHSGTLYKFLDNCVSPTGKRLLRNWICHPLK
DIESINKRLDVVEEFTANSEIMQITGQYLHKLPDLERLLGRIKSTVQSSAYLLPALLGKK
VLKQRVKSFGQLVKGFRSGIDLLLAVQKEPNMIRLLCKLCKLPILVGKSGLELFLSQFEA
AIDSDFPDYQNHDVTEDNAETLTILIDLFIEKAKEWSEVIHTISCLDVLRSFAISASLSA
GSMARPVIFPESKSTIQNQETNGPILKIQGLWHPFAVAADGQLPVPNDLLLGEARSSSVH
PRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCETCELSLVDTIFTRLGASDRIMTG
ESTFLVECTEAASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHMVERVKCRMLXA
THYHPLTKEFSAHPRVTLKHMACAFKSRSDQEPGGCDXDLVFLYRLAGGACPESYGLQVA
LMAGIPKQVVETASVAAQAMKRSIGENFKSSELRSEFSSLHEEWLKTLVGISQVVDNDKA
MFEEEDVSDMLICLWHEIRSSCSVAK
NT seq 3321 nt   +upstreamnt  +downstreamnt
atgcagcgccagaaatcgattctgtctttcttccagaaaccgtcgccggcgactcagggt
ccagtttctggcgatcctactcgcggcggaggaggtttacgatctaccgcgaaggttaac
agcgacgcttcggtacgctctgtggagcgaaatgtgccgaaacctgtggaagatgatgac
gttagaggagtggatactccgccggagaaagttcctcgtcgcgtcttgccgtctaacttc
aaggcggcggctgaatccgccggtggtggtggtggtgcttcgtctctcttctccagtatc
atgcataagtttgtgaaagtcgatgttcctcctgaacgttctggagagaggaacgttgct
gctccgcttcgtgattcatctgtatctgtgatgcctgagagtgtttttcctgaacgtcgt
ttgaataatgctcaacctcaagatagagaccgtatttctagcttcactgggagagataat
ctaagatcagtagaagatgaggatgttcttggcccagatacaccagggacgcgtccaagt
gttcctcgtttgaagcgagttctggaggatgggatgggttttactgagaataaggtctct
ctatttgattctaacaaaaggatgaaactgtttgaggatcgaatctgtggagagaaaaaa
caagtaaacgaagggaccaagttcgaatggcttgagccttctcggatcagggatgctaat
agaaggcggcctgatgatcccctttacgataggaagaccctctacataccaactgacgtt
ttcaaaaaaatgtctgcgtcgcagaagcagtattggagtgtcaagagtgagtatatggat
gttgtgcttttctttaaagtggggaaattttatgagctgtatgaggtagatgcagaatta
ggtcacaaggagcttgactggaagatgaccatgagcggtgtgggaaaatgcagacaggtt
ggtatctctgaaagtgggatagatgatgcagtgcaaaagctattagctcgtggatataaa
gttggaagaatcgagcagttagaaacatctgaccagacaaaagccagaggttcaaatact
ataataccgaggaagctagttcaagtgttaaccccatcaacagcaagcgagggtaaccta
gggcttgatcccgtccatctacttgctataaaagaggtcaaaatggagctagaaaagtgt
tcaactgtatatggatttgctttcgttgactgtgctgccttgagattttgggttgggtcc
atcagtgatgatgcttcatgcgctgctcttggagctttattgatgcaggtttctccaaaa
gaagtgatatatgacagtaaagggctatcaagagagacccaacaggctctaaggaaatat
acattgacagggtctacggcggtacaattgaatccactaccacaacaaatgggggatgca
gatgcttgtggagtgagaaatatgatagaatccagtggatacttcagaggttcttctgaa
tcgtggaaatctgctgttgatggtctaactgaatctggaattgctcttagtgctcttgga
gagctagtcaatcatctttctaggctaaagctagaagatgtacttaagaatggggatatt
catccctacaaagtttacagcggttgtctaagaattgatggccagacgatggtaaatctg
gagatattcaacaatagctgtgatggtggtcattcagggaccttgtacaaatttcttgat
aactgtgttagtccgactggtaagcggctgttaagaaattggatctgccatcccctcaaa
gatatagaaagtatcaataaaagactcgatgtggtcgaagaattcacggcaaactcagaa
attatgcaaatcactggccagtatctccataaacttccagacttagaaaggctgctcgga
cgcattaagtctaccgttcagtcatcagcctatcttttgcctgctctccttgggaaaaaa
gtgctgaaacaacgagttaaatcatttgggcaacttgtgaaagggttcagaagtggaatt
gatcttttgttggctgtacagaaggaaccgaatatgattagactgctttgtaagctctgt
aaacttcctatattagtgggaaaaagcgggcttgagttattcctttctcaattcgaagca
gccatagatagtgactttccagattatcagaaccatgatgtgacagaggataatgcggaa
actctcacaatactcattgatctatttatagaaaaagccaaagagtggtctgaggtcatt
cacaccattagctgcctcgatgtcctgagatcctttgcaatctctgcaagtctctctgct
ggaagcatggccaggcctgttatattccctgaatcgaaaagtacaattcagaatcaggaa
acaaatgggccaatacttaaaatccaagggctgtggcatccatttgcagttgcagctgat
ggtcaacttcctgttccaaatgatctactccttggcgaggctagaagcagcagtgttcat
cctcggtcgttgttactaacaggaccaaacatgggtggaaaatcaactcttcttcgtgca
acatgtcttgctgttatctttgctcagcttggttgttacgtgccttgtgagacatgtgaa
ctctctctcgtagatactatcttcacaaggcttggcgcatctgatagaatcatgacagga
gagagcaccttcttggtagaatgcactgaggcggcgtcagttcttcaaaacgcaactcag
gattcactagtaatccttgacgaactgggcagaggaactagtactttcgatggctacgcc
attgcatattctgttttccgtcacatggtagagagagtcaagtgcaggatgctcnttgca
acgcattaccatcctctcaccaaggagttctcggcccacccgcgggtcaccttgaaacac
atggcttgcgcattcaaatcaagatccgaccaagaaccaggtggctgcgacnaagactta
gttttcttgtaccggctagctgggggagcttgtcctgagagctatgggcttcaagtagca
ctcatggcgggaataccaaagcaagtggttgagacagcatcggtggcggctcaagccatg
aagagatcgattggagaaaacttcaagtcaagtgagctaaggtctgagttctcaagtctg
cacgaagaatggctcaagacattggtgggtatctctcaagtcgtcgacaacgacaaggcc
atgtttgaggaggaggatgtctctgacatgttaatttgcttatggcatgagatcagatct
tcttgctctgttgccaagtaa

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