Raphanus sativus (radish): 108805924
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Entry
108805924 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108805924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108805924
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108805924
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
RT_RNaseH_2
Motif
Other DBs
NCBI-GeneID:
108805924
NCBI-ProteinID:
XP_018433419
UniProt:
A0A6J0JEW8
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Position
6:complement(9281421..9287228)
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AA seq
1106 aa
AA seq
DB search
MQRQKSILSFFQKPSPATQGPVSGDPTRGGGGLRSTAKVNSDASVRSVERNVPKPVEDDD
VRGVDTPPEKVPRRVLPSNFKAAAESAGGGGGASSLFSSIMHKFVKVDVPPERSGERNVA
APLRDSSVSVMPESVFPERRLNNAQPQDRDRISSFTGRDNLRSVEDEDVLGPDTPGTRPS
VPRLKRVLEDGMGFTENKVSLFDSNKRMKLFEDRICGEKKQVNEGTKFEWLEPSRIRDAN
RRRPDDPLYDRKTLYIPTDVFKKMSASQKQYWSVKSEYMDVVLFFKVGKFYELYEVDAEL
GHKELDWKMTMSGVGKCRQVGISESGIDDAVQKLLARGYKVGRIEQLETSDQTKARGSNT
IIPRKLVQVLTPSTASEGNLGLDPVHLLAIKEVKMELEKCSTVYGFAFVDCAALRFWVGS
ISDDASCAALGALLMQVSPKEVIYDSKGLSRETQQALRKYTLTGSTAVQLNPLPQQMGDA
DACGVRNMIESSGYFRGSSESWKSAVDGLTESGIALSALGELVNHLSRLKLEDVLKNGDI
HPYKVYSGCLRIDGQTMVNLEIFNNSCDGGHSGTLYKFLDNCVSPTGKRLLRNWICHPLK
DIESINKRLDVVEEFTANSEIMQITGQYLHKLPDLERLLGRIKSTVQSSAYLLPALLGKK
VLKQRVKSFGQLVKGFRSGIDLLLAVQKEPNMIRLLCKLCKLPILVGKSGLELFLSQFEA
AIDSDFPDYQNHDVTEDNAETLTILIDLFIEKAKEWSEVIHTISCLDVLRSFAISASLSA
GSMARPVIFPESKSTIQNQETNGPILKIQGLWHPFAVAADGQLPVPNDLLLGEARSSSVH
PRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCETCELSLVDTIFTRLGASDRIMTG
ESTFLVECTEAASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHMVERVKCRMLXA
THYHPLTKEFSAHPRVTLKHMACAFKSRSDQEPGGCDXDLVFLYRLAGGACPESYGLQVA
LMAGIPKQVVETASVAAQAMKRSIGENFKSSELRSEFSSLHEEWLKTLVGISQVVDNDKA
MFEEEDVSDMLICLWHEIRSSCSVAK
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccagaaatcgattctgtctttcttccagaaaccgtcgccggcgactcagggt
ccagtttctggcgatcctactcgcggcggaggaggtttacgatctaccgcgaaggttaac
agcgacgcttcggtacgctctgtggagcgaaatgtgccgaaacctgtggaagatgatgac
gttagaggagtggatactccgccggagaaagttcctcgtcgcgtcttgccgtctaacttc
aaggcggcggctgaatccgccggtggtggtggtggtgcttcgtctctcttctccagtatc
atgcataagtttgtgaaagtcgatgttcctcctgaacgttctggagagaggaacgttgct
gctccgcttcgtgattcatctgtatctgtgatgcctgagagtgtttttcctgaacgtcgt
ttgaataatgctcaacctcaagatagagaccgtatttctagcttcactgggagagataat
ctaagatcagtagaagatgaggatgttcttggcccagatacaccagggacgcgtccaagt
gttcctcgtttgaagcgagttctggaggatgggatgggttttactgagaataaggtctct
ctatttgattctaacaaaaggatgaaactgtttgaggatcgaatctgtggagagaaaaaa
caagtaaacgaagggaccaagttcgaatggcttgagccttctcggatcagggatgctaat
agaaggcggcctgatgatcccctttacgataggaagaccctctacataccaactgacgtt
ttcaaaaaaatgtctgcgtcgcagaagcagtattggagtgtcaagagtgagtatatggat
gttgtgcttttctttaaagtggggaaattttatgagctgtatgaggtagatgcagaatta
ggtcacaaggagcttgactggaagatgaccatgagcggtgtgggaaaatgcagacaggtt
ggtatctctgaaagtgggatagatgatgcagtgcaaaagctattagctcgtggatataaa
gttggaagaatcgagcagttagaaacatctgaccagacaaaagccagaggttcaaatact
ataataccgaggaagctagttcaagtgttaaccccatcaacagcaagcgagggtaaccta
gggcttgatcccgtccatctacttgctataaaagaggtcaaaatggagctagaaaagtgt
tcaactgtatatggatttgctttcgttgactgtgctgccttgagattttgggttgggtcc
atcagtgatgatgcttcatgcgctgctcttggagctttattgatgcaggtttctccaaaa
gaagtgatatatgacagtaaagggctatcaagagagacccaacaggctctaaggaaatat
acattgacagggtctacggcggtacaattgaatccactaccacaacaaatgggggatgca
gatgcttgtggagtgagaaatatgatagaatccagtggatacttcagaggttcttctgaa
tcgtggaaatctgctgttgatggtctaactgaatctggaattgctcttagtgctcttgga
gagctagtcaatcatctttctaggctaaagctagaagatgtacttaagaatggggatatt
catccctacaaagtttacagcggttgtctaagaattgatggccagacgatggtaaatctg
gagatattcaacaatagctgtgatggtggtcattcagggaccttgtacaaatttcttgat
aactgtgttagtccgactggtaagcggctgttaagaaattggatctgccatcccctcaaa
gatatagaaagtatcaataaaagactcgatgtggtcgaagaattcacggcaaactcagaa
attatgcaaatcactggccagtatctccataaacttccagacttagaaaggctgctcgga
cgcattaagtctaccgttcagtcatcagcctatcttttgcctgctctccttgggaaaaaa
gtgctgaaacaacgagttaaatcatttgggcaacttgtgaaagggttcagaagtggaatt
gatcttttgttggctgtacagaaggaaccgaatatgattagactgctttgtaagctctgt
aaacttcctatattagtgggaaaaagcgggcttgagttattcctttctcaattcgaagca
gccatagatagtgactttccagattatcagaaccatgatgtgacagaggataatgcggaa
actctcacaatactcattgatctatttatagaaaaagccaaagagtggtctgaggtcatt
cacaccattagctgcctcgatgtcctgagatcctttgcaatctctgcaagtctctctgct
ggaagcatggccaggcctgttatattccctgaatcgaaaagtacaattcagaatcaggaa
acaaatgggccaatacttaaaatccaagggctgtggcatccatttgcagttgcagctgat
ggtcaacttcctgttccaaatgatctactccttggcgaggctagaagcagcagtgttcat
cctcggtcgttgttactaacaggaccaaacatgggtggaaaatcaactcttcttcgtgca
acatgtcttgctgttatctttgctcagcttggttgttacgtgccttgtgagacatgtgaa
ctctctctcgtagatactatcttcacaaggcttggcgcatctgatagaatcatgacagga
gagagcaccttcttggtagaatgcactgaggcggcgtcagttcttcaaaacgcaactcag
gattcactagtaatccttgacgaactgggcagaggaactagtactttcgatggctacgcc
attgcatattctgttttccgtcacatggtagagagagtcaagtgcaggatgctcnttgca
acgcattaccatcctctcaccaaggagttctcggcccacccgcgggtcaccttgaaacac
atggcttgcgcattcaaatcaagatccgaccaagaaccaggtggctgcgacnaagactta
gttttcttgtaccggctagctgggggagcttgtcctgagagctatgggcttcaagtagca
ctcatggcgggaataccaaagcaagtggttgagacagcatcggtggcggctcaagccatg
aagagatcgattggagaaaacttcaagtcaagtgagctaaggtctgagttctcaagtctg
cacgaagaatggctcaagacattggtgggtatctctcaagtcgtcgacaacgacaaggcc
atgtttgaggaggaggatgtctctgacatgttaatttgcttatggcatgagatcagatct
tcttgctctgttgccaagtaa
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