Raphanus sativus (radish): 108809665
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Entry
108809665 CDS
T06014
Name
(RefSeq) polygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108809665
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108809665
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
AsmA_2
Motif
Other DBs
NCBI-GeneID:
108809665
NCBI-ProteinID:
XP_018437326
UniProt:
A0A6J0JQK3
LinkDB
All DBs
Position
Unknown
AA seq
397 aa
AA seq
DB search
MGSYLGIYTILVLCLLGYSANAEVFNAGGPPNSDITAAVLKAFTSACQAPAPSQVLIPKG
DFKLGEIAMTGPCKSPIEFTLQGNVKADGGSTQGKDRWVVFEKINGFKLNGGGTFDGEGN
AAWKANNCHKTFECKKLPISVRFDFVDNADIRDVTSLDAKNFHFNVISGKNMTFDNIKII
APAESPNTDGIHLGRCEGVKILNTKIATGDDCISVGDGMKNLLIEKVVCGPGHGISVGSL
GRYGWEQDVNDIKVMNCTLQGTDNGLRIKTWPSAACATTASGIHFEDIILNNVSNPILID
QEYCPWNQCNKNKPSTIKLVDITFRKIRGTSGNKDAVKLLCSKGHPCENVEIGDINIEYK
GPDGPPTFECTNVTPKLVGTQNPKACVGPVVKAPGQA
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgggttcatatttaggaatatatacaattttggttctatgtttgctaggatattcagcc
aatgctgaggtgttcaacgctggtggtcctccaaattctgatatcaccgcggcagttctt
aaagcattcacatcggcatgtcaagctccggcaccaagccaggtgctgatcccaaaaggt
gacttcaagcttggtgagatcgcgatgactggtccatgcaaatctccaatcgagttcacc
ttgcaaggcaacgtcaaagctgacggtggctctactcagggaaaggatagatgggttgtg
ttcgaaaaaattaatggttttaagttgaacggaggtggaacatttgacggtgaaggcaat
gcagcttggaaagccaataactgccacaagacttttgagtgcaagaagcttcccatcagt
gtgaggtttgattttgtggataacgctgatataagagacgtaacctcattagatgccaaa
aacttccacttcaacgttatcagcggcaagaacatgacatttgataacatcaagatcatt
gccccagctgaaagccccaacactgacggtattcatttgggaagatgtgagggagtcaag
atcctcaacactaagatcgccacaggagatgactgcatctccgtgggagatgggatgaag
aatctcctcatcgagaaagttgtgtgcggtccaggacatggaatcagtgttggaagcctt
ggaaggtacggatgggagcaagatgtaaatgacattaaggttatgaactgcaccctccag
ggaaccgataacggtctgaggatcaagacatggccctctgcggcttgcgccacaacggct
tccggtattcattttgaggatatcatccttaacaacgttagcaacccaatcctcatcgac
caggagtactgcccttggaaccaatgcaacaagaacaaaccctcaacaattaagctggtg
gacattaccttcaggaagattagaggaacatcagggaacaaggacgcagtgaagctattg
tgcagcaagggacatccatgtgagaatgttgagattggagacattaacattgaatacaaa
ggacctgatggtccacccactttcgagtgcacaaacgtcacacctaagcttgtgggaacc
cagaacccaaaggcttgcgttggacctgtcgtcaaggcacctgggcaagcgtaa
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