KEGG   Raphanus sativus (radish): 108822988
Entry
108822988         CDS       T06014                                 
Name
(RefSeq) serine/arginine-rich splicing factor SR45
  KO
K14325  RNA-binding protein with serine-rich domain 1
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03013  Nucleocytoplasmic transport
rsz03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108822988
   03015 mRNA surveillance pathway
    108822988
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108822988
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     108822988
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_5 Nup35_RRM_2 RRM_3
Other DBs
NCBI-GeneID: 108822988
NCBI-ProteinID: XP_018451708
UniProt: A0A6J0KVU8
LinkDB
Position
Unknown
AA seq 362 aa
MAKASRGRRSPSVSGSSSRSSSSRSRSRSRSLSSSSSPSRSVSSGSRSPPPPPRGKRKAT
ESLVLHVGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNLPKGYAYVEFKARADAEKA
LLFMDGGQIDGKVVKAKFTLPARQKVSPPPKPVSGVPKREAPKPDNAAADVEKDGAGRPR
EISPRRRSPLPRRLPDSSPRRRPSPPIRRRGDTPSPPRRRAESPSRGRSPSSPPPRRHRS
PPRGSLRRIRGSPVRRRSPPPLRRRSPPRRLRSPLRRSPIRRRSRSPIRRPVRSRSRSIS
PRRGRGPAGRRGRSSSYSSSPSPRSIPRKISRSRSPKRPLRGKRSSSNSNSSSSGSPPPR
KA
NT seq 1089 nt   +upstreamnt  +downstreamnt
atggcgaaagcaagccgtggccgtcgttcaccttccgtctcagggtcttcatctcggtcc
agctcctccagatctcgttcccgttctagatccctctcttcttcatcatctccttcgcgg
agcgtcagttccgggagtcgtagtcctcctcctccacctcgtggaaaaaggaaagctaca
gaatctcttgttctccatgtcggttctcttagcaggaatgtaaacgaagaccatctgaaa
gaaatttttggcaactatggtgaagttgtacacgtagaacttgcaattgatcgagctgtt
aatcttccaaaaggatatgcttatgttgagttcaaggcgagagctgatgctgagaaagct
ctgctgtttatggatggtggtcaaattgacggaaaggttgttaaagcaaagttcacacta
ccagcgcgtcagaaagtatctccacctcctaaacctgtctcaggtgtaccaaagagagag
gctccaaaacctgataatgccgctgctgacgttgagaaagatggggccggacgcccaaga
gagatttctccgagaaggcgatcaccactacctaggagattacctgattcttcccctcgc
cggaggccgagccctcctatccgccgtcgtggtgatacaccatcaccacccagacgcagg
gcagaatcgccatctagaggccgttctccatcttcccctcctccaagaagacatagatct
cctccgaggggctcccttagaagaatccgcggcagtcctgttcgaagacggtctcctcct
cctctaagacgaaggtcacctccaaggagactacgcagtcctctcagaagatctccaatc
cgcagacgtagccgatccccgattcgtaggcctgttcgctctcgctcaagatccatctca
cctcgcaggggacgaggaccagctgggagacgtgggaggtcatcttcttattccagttcg
ccaagtcctagaagtattcctaggaagatttcgaggagccgcagtcctaagaggccactg
agaggaaaaagaagcagcagtaacagtaacagcagcagcagcggctcaccgcctccccgc
aaagcataa

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