Raphanus sativus (radish): 108842181
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Entry
108842181 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: glycine dehydrogenase (decarboxylating) 1, mitochondrial
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00260
Glycine, serine and threonine metabolism
rsz00630
Glyoxylate and dicarboxylate metabolism
rsz00785
Lipoic acid metabolism
rsz01100
Metabolic pathways
rsz01110
Biosynthesis of secondary metabolites
rsz01200
Carbon metabolism
Module
rsz_M00532
Photorespiration
rsz_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
108842181
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
108842181
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
108842181
Enzymes [BR:
rsz01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
108842181
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Gene cluster
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Motif
Pfam:
GDC-P
GcvP2_C
Beta_elim_lyase
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-GeneID:
108842181
NCBI-ProteinID:
XP_018470519
UniProt:
A0A6J0MEI4
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Position
2:complement(37069686..37074272)
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AA seq
1044 aa
AA seq
DB search
MERARRLAYRGIVRRLVNESKRHRNGPEITPHHVPSVVPHAPSRYISSLSPFLSNNHRSV
NLPKHHHHHNQTRSISVDAVKPGDTFPRRHNSATPDEQAHMAKYCGYDHIDSLVDDTVPK
QIRIDSMKFSKFDGGLTESQMIAHMTDLASKNKVFKSFIGMGYYNTHVPPVIVRNILENP
AWYTQYTPYQAEISQGRLESLLNFQTMITDLTGLPMSNASLLDEGTXAAEAMAMCNNIQK
GKKKTFVIASNCHPQTIEICKTRADGFDLKVVTKDLKEIDYSCGDVCGVLVQYPGTEGEV
LDYGEFVKNAHANGVKVVMATDLLALTVLKPPGEFGADIVVGSAQRFGVPMGYGGPHAAF
LATSGEYKRMMPGRIIGVSVDSTGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAA
MYAVYHGPAGLKSIAERVHGLAGIFSLGLKKLGVAEVQDLPYFDTVKIKCSDAHAIADAA
VKSEMNLRVVDSNTITASFDETTTLDDVDKLFKVFASGKPVPFTAESLAPEVKNSIPSNL
TRESSYLTHPIFNMYHTEHELLRYIHKLATKDLSLCHSMIPLGSCTMKLNATTEMMPVSW
PSFTDIHPFAPIDQAQGYQEMFSDLGDLLCTITGFDSLSLQPNAGASGEYTGLMVIREYH
RSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDAKGNINMEEVRKAAEDNKDSLA
ALMVTYPSTHGVYEETIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLH
KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVIPTGGFPQPEKTEPLGPIAAAPWGSALI
LPISYSYIAMMGSGGLTEASKIAILNANYMAKRLEKHFPILFRGANGTVAHEFIIDLRGF
KNTAGIEAEDVAKRLMDYGFHAPTMSFPVSGTLMIEPTESESKAELDRFCDTLISIREEI
AQIEKGNADVQNNVLKGAPHSPAMLMSDTWKKPYSREYAAFPTAWLRSAKFWPTTGRVDN
VYGDRKLVCTLLPEEEQVAAAVSA
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcgcacgtaggcttgcttacagaggcatcgtgagacgcctcgttaacgaatcg
aaacgacaccgtaacggccccgagatcacccctcaccatgtcccctccgtcgtcccccac
gctccctctaggtacatctcttccctctcccctttcctctccaacaaccacagatccgtc
aatctccccaaacaccaccaccaccacaaccagacgcgatccatctccgtcgacgccgtc
aagcctggcgacaccttcccgcggcgccacaactccgcgacgccggacgagcaagcgcac
atggcgaaatactgcggatacgaccacatcgactccttagtcgacgacaccgtcccgaaa
cagatccgaatcgactccatgaagttctccaaattcgacggaggccttacggagagccag
atgatcgctcacatgaccgacctcgcctccaagaacaaggtcttcaagtccttcatcggg
atggggtactacaacacccacgtccctcccgtcatcgtccgcaacatcctcgagaacccc
gcctggtacactcagtacactccttaccaggccgagatctcccagggacgcctcgagtcc
ctcctcaacttccagaccatgatcaccgacctcaccggcctccccatgtccaacgcttcc
ttgctagacgaagggacgncagctgctgaagccatggcgatgtgtaacaatattcagaag
gggaagaagaagacgttcgtgatcgcgagtaactgccaccctcagacgatcgagatttgc
aaaaccagagctgacggttttgatttgaaagtcgttacgaaggatctcaaggagattgat
tatagctgtggtgacgtgtgtggggtcctcgttcagtaccctgggactgaaggggaagtg
ttggattacggtgagtttgttaagaacgctcatgctaacggtgtgaaggttgttatggcg
acggatctgttggccttgacggtgttgaagcctcctggggagtttggggctgatattgtg
gttggttcggctcagaggtttggtgttccgatgggttacggtggtcctcatgctgcgttt
ttggctacttcgggagagtataagagaatgatgcctgggaggattattggtgtcagtgtt
gattctactgggaagccagctctgcgtatggctatgcagactagggaacagcatattagg
agggataaagccactagcaacatctgtactgctcaagcgttgcttgcaaacatggctgcc
atgtatgctgtttaccacgggcccgcgggtctgaaatctattgccgaacgcgttcatggt
cttgctggcatattttccttgggattgaagaagctcggtgttgctgaagttcaagatctt
ccctactttgacactgtgaaaatcaagtgctcggatgcacatgcaattgctgatgcagct
gtcaagagcgaaatgaatctgcgtgttgtggactcaaacactattactgcttcttttgac
gaaacaactaccttggatgatgtcgataaacttttcaaagtttttgcttctggcaagcct
gttccgttcacggctgaatctcttgctcctgaggttaagaattccatcccctctaaccta
acaagagagagctcttatctcacccacccaatcttcaacatgtaccacacagagcatgag
ttgctcaggtacatccacaagttggcgacgaaggatctctcactgtgccacagcatgatt
ccattgggatcttgtacaatgaagttaaatgcaacaactgaaatgatgccagtctcatgg
ccaagtttcactgacatccacccatttgctccaattgatcaagcacaaggttatcaggaa
atgttcagcgacttgggtgatctattgtgtacaatcactgggtttgactctctctcattg
caacctaatgctggtgcttctggtgagtacaccgggctcatggttatccgcgaatatcac
aggtcaagaggagatcaccacagaaatgtgtgtatcatacccgtctctgcacacgggaca
aaccctgcaagcgctgctatgtgcgggatgaaaattattacggttggaactgatgctaag
ggaaatatcaacatggaggaggtgagaaaagctgctgaagacaacaaagacagcttagct
gccctcatggttacatacccttcaactcatggagtctatgaagagactattgatgagatt
tgcaaaataatacacgacaatggaggtcaagtgtacatggatggtgccaacatgaatgca
caggttggtttgaccagccctggtttcattggagcggatgtgtgccatctcaatctccac
aagaccttctgtattcctcatggaggtggtgggcctggaatgggtcccattggtgtgaag
aagcatttagcaccatttcttccttctcaccctgtgatacccactggtggtttcccgcaa
cccgagaagacagaaccgctgggtcccattgccgctgcaccgtggggatctgcccttatc
ttgccaatatcttactcttacattgccatgatgggatctggtggactcactgaggcctca
aagattgcaatcttgaatgccaattacatggcaaagcgcctagagaagcacttcccaatt
ctgttccgtggtgccaacggaacagtagcacacgaattcatcatagatttgagaggcttc
aagaacactgctggaatagaagcagaggatgtggcgaaacggctaatggactatggattc
catgcacccacaatgtctttccctgtctctggaacgctcatgattgagccaaccgagagt
gaaagcaaggcggagttagacaggttctgcgatactctcatttcgatcagggaagaaatt
gcacagattgaaaaaggaaatgcagatgtccagaacaacgttctcaagggagctccacat
tctccagctatgcttatgtcagacacatggaagaagccgtattcccgagagtacgctgct
ttccctaccgcatggctccgatctgccaagttctggccaaccacagggcgggtggacaat
gtgtatggagacaggaagctggtgtgcactctcctcccagaagaagaacaagtcgcagct
gcagtatcagcttga
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