Raphanus sativus (radish): 108852324
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Entry
108852324 CDS
T06014
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108852324
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108852324
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Motif
Other DBs
NCBI-GeneID:
108852324
NCBI-ProteinID:
XP_018481324
UniProt:
A0A6J0N9Z0
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Position
4:41201513..41203302
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AA seq
402 aa
AA seq
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MACIASALKALCLSLLFVAIASRPTNKPEVFNVLRFGAKPDGKTDSINVFTNIWKSACAS
KGGSSKIYVPKGTFYLGGAVEFVGPCTNQIEFVIDGTLLAPSNPGDIEKGTWINFMYINN
LLISGAGTLDGQGKESWPLNDCRKNPNCKLAKTMGFSFVNNSRINGITSLNSKMGHFDFF
AVHHFNITGVTIKAPGDSPNTDGLKFGSCSNIHISDTHIGTGDDCIAILSGVTDMDISNV
KCGPGHGISVGSLGKGKDEKDVNGLTVRDTVFNGTSDGIRIKTWESSASQIVVSNFVYEN
IHMINVGNPINIDQKYCPYPPCEKKGESHVQIQDLKLKNIYGTSKNKVAVKLKCSKSFPC
KNVELVDIDLEGVKDGPSTAVCENVHGSAHGKMVPQQCLNGP
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcatcgcttctgctcttaaggctttgtgtttgtctctcttgttcgtcgccatt
gcaagtcgtcccaccaacaagccagaggtttttaatgtcctacgctttggtgctaaacct
gacggcaaaactgatagcatcaatgtgttcacaaatatatggaaaagtgcatgcgcaagt
aaaggtggaagtagtaaaatctatgtaccgaaaggaacattctatctcggtggtgcagta
gagttcgtaggaccatgcacaaatcaaattgaattcgttatcgatggaactttattggct
ccttcaaaccctggagacattgaaaagggtacgtggatcaacttcatgtacattaacaat
ctcctaatctctggtgctggtacactcgacggccaagggaaagagtcttggccactcaac
gactgccgcaaaaaccccaactgtaaactagctaagaccatgggattttcattcgtcaat
aactcgagaatcaacgggataacatcactcaacagcaaaatgggacacttcgacttcttc
gccgtccatcacttcaacattaccggcgtcactataaaagctcctggcgacagccccaac
accgacgggcttaagttcgggtcctgtagtaacattcacatctccgacacacacatcggt
acgggagacgactgtatcgccattctttccggagttactgacatggatatctctaatgtc
aaatgtggtcccggacatgggatcagtgttggaagcttagggaagggcaaagacgagaag
gatgttaatggcctaaccgtaagagacacggtttttaacggtacaagtgatggtattcgg
atcaagacttgggaatcttcagcttctcagatcgttgtttctaacttcgtgtatgagaac
attcacatgattaatgttggaaacccaatcaacatcgatcagaagtattgtccttatcca
ccatgtgaaaagaagggggagtctcacgtacagatccaagaccttaagctaaagaacata
tatggaacttcgaagaacaaagtggcggtgaagctaaaatgtagcaagagctttccgtgc
aagaacgttgagctagttgacatagacctggagggagtcaaggatggtccttccactgcg
gtatgtgagaatgttcacggttctgcacatggcaagatggttcctcagcagtgtctgaac
ggtccatag
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