KEGG   Ramlibacter tataouinensis: Rta_12560
Entry
Rta_12560         CDS       T01544                                 
Symbol
gspD
Name
(GenBank) candidate secretin, general secretion pathway protein D
  KO
K02453  general secretion pathway protein D
Organism
rta  Ramlibacter tataouinensis
Pathway
rta03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:rta00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Rta_12560 (gspD)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:rta02044]
    Rta_12560 (gspD)
Secretion system [BR:rta02044]
 Type II secretion system
  General secretion pathway protein
   Rta_12560 (gspD)
SSDB
Motif
Pfam: Secretin Secretin_N STN TPR_2 TPR_19 TPR_1 type_II_gspD_N0 TPR_14 TPR_7 TPR_11 TPR_8
Other DBs
NCBI-ProteinID: AEG92341
UniProt: F5Y2H8
LinkDB
Position
1298431..1300437
AA seq 668 aa
MRWRYGGLCIAAALSGCADIQHLKGKTEIAFSRPLDGVQSLEAAAGTDPYNPLYQIDYLG
QREKYAREFLTQAELLRAEGKFAEATAAYERVLQLDRGNMRATEGLVGLQHDLRDERRLA
EGEGFLAQGKADMALSRAQDVLERSSRNRRAGKLKEASLNALTEQQVARDRIQAGRAVLD
APVTLQLRDAPIRIAFESISKSTGLNILLDRDVKQDVRVSIFVKDISVADAIDLVLLQNQ
LDKRVINTNTILIYPSNPAKQAEYEDLVIRTFQVTNADLKYLTGLLKTMLKVKEVSADER
SNTLVIRDTPERIRLAARLIAAHDIPEPEVMLEVQVLEISSGRNSNLGIQPPTGITVQTP
GTAGTLTLGQLRSLGRNDLLVSPLTASINFKLEDADARVLASPRIRARNREKARILIGDR
VPTITNTVTPINTGASVVTGNVTYQDVGLKLEFESQVYGNQEVGIKVNLEVSNIVQAFTD
PQGGRSYQIGTRNANTTLRLKDGETQVLGGLISDNERNTASLIPGLGHLPIVGKLFGNNE
GSSGQTEIVLAVTPRILREASVSAPQTTSIFSGTVNTVRERPILAEPLKVLKLADRTAVV
PPGSVAATPTVPFPVAPPESPASPPAAAPPSGNPVQEAPAPQVSEPVPMSSGAALPPPPP
LIHRGQRN
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgcgctggcgatatgggggtctgtgcattgccgcggctctcagcggctgtgctgatatt
cagcatctcaaaggcaaaaccgaaattgccttcagcaggcctctcgatggcgttcaatct
cttgaggcggcagctggaacggacccctacaacccgctgtatcaaatcgactacctaggc
cagcgggaaaagtacgcccgggaattcttgacgcaggccgagctgctgcgtgccgagggg
aagttcgcagaagcaacggcagcctatgagcgggtgctccagctggatcggggcaacatg
cgcgcgacggaaggtctcgtcgggctgcagcacgatttgcgcgacgagcgccgtttggca
gaaggcgaaggctttctcgcacagggcaaagctgacatggctctgagtcgggcccaggat
gtcctggagcgaagttcgagaaaccggcgcgccggcaagctgaaggaagcatcgctaaat
gcccttaccgagcagcaggttgcgcgggatcggatccaggccggccgggcggtcctggac
gccccggtcaccttgcagttgcgtgatgcgcctatccggatcgccttcgaatccatttcc
aagtccacggggttgaacattttgctggaccgggacgtgaagcaagacgtccgtgtcagc
atcttcgtcaaggacatctccgtagcggatgcgattgacctcgtgctgctgcagaaccag
ctcgacaagcgtgtcatcaacaccaataccatcctgatctacccttcgaaccctgccaag
caggcagagtatgaggacttggtcatccgtaccttccaggtgaccaatgcggacctgaag
tacctgacaggcctcctgaagacaatgctcaaggtcaaggaagtatctgccgacgagcgc
tccaacacactggtcattcgagatacacctgaacgaatccgcttggctgcgcggctgatc
gcggcgcatgacattcccgagccggaggtcatgctggaggttcaggtgctggaaatcagc
tcaggccgaaacagcaacctcggcatccaaccgcccacgggcatcacggtgcaaacgccg
ggaaccgctggaaccctgaccctgggccaactgcgcagtctcgggcgaaacgacctgctc
gtgtcgccgctcacggccagcatcaacttcaaactcgaggacgccgatgcccgcgtcctt
gccagtccacgcattcgcgcccggaacagggaaaaggccaggatcttgatcggtgatcgg
gtgcccaccatcaccaacactgtgacgccgatcaacaccggggcgtcggtcgtgaccggc
aatgtcacctaccaggacgttggcctgaagctggaattcgagtcgcaggtctacggcaat
caggaggtaggcatcaaggtgaacctggaggtcagcaacatcgtccaggcctttaccgat
ccccagggcgggcgctcctaccagatcgggaccagaaacgccaacaccacgcttcggctg
aaggatggcgaaacccaggttcttggtggattgatctccgacaatgagcggaatacggcc
tccctgattcccgggctggggcacctgcccatcgtggggaagttatttggcaacaatgaa
ggaagcagtggccaaaccgagatcgttctggcggtcacccctagaattttgcgagaggct
tcggtcagcgcaccccagacgacgagcatcttctcgggaaccgtgaacacggtgcgcgag
cggccgatccttgccgagccgctcaaggtgctgaagcttgccgatcgaactgctgttgtt
ccgcccggttccgtagcagcaacacccacggtgccttttcctgttgcgccccctgaaagc
cctgcgagcccgcctgcagccgctccgccttcgggtaacccggtccaagaggcacccgca
ccccaggtcagtgaaccggtgccgatgagctcaggtgctgcgctgccaccaccgccaccg
ttgatccacagaggccagcgcaactga

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