Ramlibacter tataouinensis: Rta_15410
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Entry
Rta_15410 CDS
T01544
Symbol
alkA
Name
(GenBank) Candidate DNA glycosylase
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rta_15410 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_15410 (alkA)
Enzymes [BR:
rta01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Rta_15410 (alkA)
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rta_15410 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
GvpG
Motif
Other DBs
NCBI-ProteinID:
AEG92632
UniProt:
F5Y4X6
LinkDB
All DBs
Position
1613034..1613684
Genome browser
AA seq
216 aa
AA seq
DB search
MSDAGGSPVQLARPDYWEEACRHLARKDRVMKRLIPQFGDACLQSRGDAFTTLARSIVGQ
QISVKAAQSVWDRFAKLPRRMTPAAVLKLKVDDMRAAGLSARKIEYLVDLALHFDSGAIH
VDAWDRMEDEAIITELVGIRGIGRWTAEMFLIFHLMRPDVLPLDDIGLINGISKNYFSGD
PVSRSEAREVAAAWTPYCSVATWYIWRSLDPLPVAY
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatgccggcggcagccccgtccagctggcccggcccgactactgggaggaggcc
tgccgccacttggcccgcaaggaccgggtgatgaagcgcctgatcccgcagttcggcgac
gcctgcctgcagtcgcgcggcgatgccttcaccacgctggcgcgcagcatcgtcggccag
cagatctcggtcaaggcggcgcaaagcgtctgggaccgcttcgccaagctgccgcgccgc
atgacgcccgcggcggtgctcaagctcaaggtggacgacatgcgggccgccggcctgtcg
gctcgcaagatcgagtacctggtcgacttggcgctgcatttcgattccggtgccatccac
gtggatgcctgggaccggatggaggacgaggccatcatcacggagctggtcggcatccgc
ggcatcggccgctggacggccgagatgttcctcatcttccacctgatgcggccggatgtg
ttgcctttggacgacatcgggctcatcaacggcatcagcaagaactacttctcgggcgac
cccgtcagccgcagcgaggcgagggaggtggcggccgcctggaccccttactgcagcgtc
gccacttggtatatttggcgctcgctcgatccgctgcccgtcgcctactga
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