Ramlibacter tataouinensis: Rta_26470
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Entry
Rta_26470 CDS
T01544
Symbol
pnp
Name
(GenBank) Candidate polyribonucleotide nucleotidyltransferase protein
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rta_26470 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rta03019
]
Rta_26470 (pnp)
03016 Transfer RNA biogenesis [BR:
rta03016
]
Rta_26470 (pnp)
Enzymes [BR:
rta01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Rta_26470 (pnp)
Messenger RNA biogenesis [BR:
rta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Rta_26470 (pnp)
Transfer RNA biogenesis [BR:
rta03016
]
Prokaryotic type
tRNA degradation factors
Rta_26470 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
DUF5813
Phage_tube
S1_2
Motif
Other DBs
NCBI-ProteinID:
AEG93748
UniProt:
F5Y3U1
LinkDB
All DBs
Position
complement(2816701..2818932)
Genome browser
AA seq
743 aa
AA seq
DB search
MSIFNKVSKTFTWGQHTVTLETGEIARQSGGAVVVNIDDTVVLATVVASKTAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFFNEVHVVIHTL
SLNPEVDADIAAMIGTSAALAISGIPFAGPIGAARVGYVNGEYVLNPGQTQRKESQLDLV
VAGTEAAVLMVESEAQQLPEEVMLGAVVFGHEQGKIAINAIHELVREAGKPVWDWQPPAQ
DEPFIAKVKALAEEKLRAAYQIRSKQARTQALREASASVLDSLKAEGSEFDAAKVADLLF
GIESSIVRSQILAGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVTTLGT
ERDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTK
EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKQGNRFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTDETGCQINIEEDGTITIA
ATDAAKAEEAKKRIEQITAEVEIGKVYEGPITKILDFGALINLLPGKDGLLHISQIAHER
VEKVGDYLSEGQVVRVKVLETDEKGRVKLSMKALLERPAGMPEHNGGERRERAERGDRPP
RESREPREPREPQQAAPVEPQGE
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcttcaacaaagtcagcaagaccttcacctggggccagcacaccgtcaccctg
gaaaccggcgagatcgcgcgccagtccggcggcgccgtggtggtcaacatcgacgacacc
gtggtgctggccaccgtggtcgcctccaagaccgccaagccgggccaggacttcttcccg
ctgaccgtcgactacatcgagaagacctacgccgcgggcaagatccccggcagcttcttc
aagcgcgaggccaagcccagcgagctggagacgctgacctcccgcctgatcgaccgcccg
atccggccgctgttccccgagggcttcttcaacgaagtgcacgtggtcatccacacgctg
tcgctcaaccccgaggtggacgccgacatcgccgccatgatcggcaccagcgccgcgctg
gcgatctccggcatcccgttcgccggaccgatcggcgccgcgcgcgtgggctacgtcaac
ggcgagtacgtgctcaaccccggccagacccagcgcaaggaatcgcagctggacctggtg
gtggccggcaccgaggccgccgtgctgatggtcgagtccgaggcgcagcagctgcccgag
gaggtgatgctgggcgccgtggtgttcggccacgagcagggcaagatcgccatcaatgcc
atccacgagctggtgcgcgaggccggcaagccggtgtgggactggcagccgccggcgcag
gacgagcccttcatcgccaaggtcaaggccctggccgaagagaagctgcgcgccgcctac
cagatccgcagcaagcaggcccgcacccaggccctgcgcgaggcctcggcctccgtgctc
gacagcctgaaggccgaaggcagcgagttcgacgcggccaaggtggccgacctgctgttc
ggcatcgagtcgtccatcgtgcgcagccagatcctggccggcgagccgcgcatcgacggc
cgcgacacccgcaccgtgcgcccgatcgagatccgcaacggcgtgctgccgcgcacccac
ggctcggcgctgttcacccgcggcgagacccaggccctggtggtcaccacgctgggcacc
gagcgcgacgcgcagcgcatcgacgcgctggccggcgagttcgaggaccgcttcatgttc
cactacaacatgccccccttcgccaccggcgaggtgggccgcatgggctcgaccaagcgc
cgcgagatcggccacggccggctggccaagcgcgcgctggcggcctgcctgccgaccaag
gaggagttcccctacaccatccgcgtggtgtcggagatcaccgagtccaacggctcctcg
tccatggcctcggtgtgcggcggctgcctgtccatgatggacgccggcgtgcccatgaag
gcgcacgtggccggcatcgccatgggcctgatcaagcaaggcaaccgcttcgcggtgctg
accgacatcctgggcgacgaggaccacctgggcgacatggacttcaaggtggccggcacc
accaacggcatcaccgccctgcagatggacatcaagatccagggcatcaccaaggagatc
atgcaggtcgccctggcccaggccaaggaggcgcgcatgcacatcctgggcaagatgcag
gaggccatgggcgaggccaagaccgaggtgagcagcttcgcgcccaagctctacaccatg
aagatcaaccccgagaagatccgcgacgtgatcggcaagggcggcgcggtgatccgcgcg
ctgaccgacgagaccggctgccagatcaacatcgaggaagacggcaccatcaccatcgcg
gcgaccgacgccgccaaggcggaggaagccaagaagcgcatcgagcagatcaccgcggaa
gtggagatcggcaaggtctacgaaggcccgatcaccaagatcctggacttcggcgcgctg
atcaacctgctgcccggcaaggacggcctgctgcacatcagccagatcgcccatgagcgc
gtggagaaggtcggcgactacctgtccgaaggccaggtggtgcgcgtcaaggtgctggag
accgacgagaagggccgcgtcaagctgtccatgaaggcgctgctggagcgcccggccggc
atgcccgagcacaacggcggcgagcgccgcgagcgtgccgagcggggcgaccgtccgccg
cgcgagtctcgtgagccgcgtgagccgcgcgagccccagcaggcggctccggtcgagccg
caaggcgagtga
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