Rathayibacter toxicus WAC3373: APU90_02745
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Entry
APU90_02745 CDS
T04269
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rtc
Rathayibacter toxicus WAC3373
Pathway
rtc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rtc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
APU90_02745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtc03400
]
APU90_02745
Enzymes [BR:
rtc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APU90_02745
DNA repair and recombination proteins [BR:
rtc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
APU90_02745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UxuA
Motif
Other DBs
NCBI-ProteinID:
ALS56822
UniProt:
A0A0C5BDJ6
LinkDB
All DBs
Position
complement(602920..606537)
Genome browser
AA seq
1205 aa
AA seq
DB search
MPLKEILSALSRASTFDNALAYALRDADFSVPDGLRVPLLAGLLGRRAEAGRPSAVLVIT
ATGRDSESVHESLHSVLPDADVIDFPAWETLPHERLSPSAEIVGRRLDALRRMRTWSQER
PLVVVASVRAALQPVADNLTDSEPIVLIKGRGDYDLGRLAAELVDLAYARVDMVTRRGEF
AVRGGILDVFPAIAEHPSRIEFFGDEIESIRGFSVADQRSLPGESDSVTLPPSRELLLVP
AVRQRAREMLHEFPGLSGMLAKIAEGIPVEGMESLAPALLERLVPISHYLPDGAAVAVFS
PEKVATRAISLGETNREFLQAAWSAATAGAEAPIDLASGEFLSLGALRDSLTHRVSAPAT
FDHPWWTMSTFRRGPAAGEAEVLPEELGTDEILAVRVEGESVLSFGSDIEGALGYVRSRL
ADGWSVVLTAPGAGTSERTDQVLAEHEVAARSVADLPTELEPGLAYVVQASVDHGFQLAE
ARLALLTDTEFYGRAAGYDSRVVKKLASRRKNVVDPLQLAPGDFVVHATHGIGKFVELSQ
REVSTGGRNPVKTRREYLVLEYAPSKRGYPGDKLLVPTDQLDLLSRYIGGEAPALSKMGG
SDWAQAKSKARRAVRDIAVELVKLYSARMASRGYAFSPDTPWQRELEEAFPFVETPDQLT
VIDEVKADMERSIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVRQHLE
TFQERFAGFPVHLRALSRFQGAKEAQETVEGLADGSIDMVIATHRLLSDTIVFKDLGLLV
IDEEQRFGVEHKDKLKALKKNVDILSMSATPIPRTLEMAVTGIREMSTLATPPEERHPIL
TFVGPYSEKQVTAAIRRELLREGQVFFVHNRVSTINRVASQLAELVPEARIAVAHGKLSE
SHLERIIVDFWERKFDVLVSTTIVETGLDIPNANTLIVDRADKYGLSQLHQLRGRVGRGR
ERAYAYLLYDELKPLSETAHDRLHTLAAHSDLGGGMQIALKDLEIRGAGNLLGGEQSGHI
QGVGFDLYLRMIGEAVDTFRGEVVEGQTELRLELPVDARIPEDYIDSERLRLEAYQKLSA
ASSPNAKEGSIDLVIEELTDRYGEFPEAVENLIAVSRLRVRAQKAGLSDVVAMGSQMRLA
PAHLPDSVHVRLRRLYPAAKYLQQANAVLVPMPVVDGSPLGDRPLIEWVRGLLDALFPDS
APVVG
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
gtgccactcaaggagatactctcggcgctgtcgcgcgcctcaacctttgacaatgccctc
gcctatgcgctgcgtgacgcggatttttccgtccccgacggcctgcgtgtaccactgctg
gccggtctgttgggacgccgtgcggaggcgggtcggccgtcggctgtgctggtaattacg
gcgacggggcgcgactccgagtcagtgcacgagtccctccatagcgttcttcccgacgct
gacgtgatcgattttccagcgtgggagacgctcccgcacgagaggctgagccccagcgcc
gagatcgtgggtcgtcgactcgacgcactccggcgaatgagaacgtggtcgcaagagagg
ccgttggtagtggtggcctctgtgcgtgccgccctgcagccagtagcggataatctcacc
gatagcgagccgatagttctcatcaagggtcgcggggactacgaccttggtcgtctagcg
gcggagttagttgacctcgcttatgcgcgcgtggacatggtcactcggcgtggagagttt
gccgttcgcggcggtatcctcgacgtttttcctgccattgccgaacatccgagtcgtatc
gagtttttcggtgacgaaatcgaatcgatccgcggcttctcggtggcggatcagcgctcg
cttccgggggaatctgattccgttaccttgcctccgagtcgtgaattgctcctggtgccg
gcagtacgtcagcgtgcgcgagagatgctgcacgagttcccgggcctgtcggggatgctc
gctaagatcgccgagggcattccggtggaggggatggaatcgttggccccggcgctgcta
gagcggctagtaccgatctcgcactaccttcctgacggtgctgccgtcgctgtgttctct
cctgagaaagtggcgactagagcgatcagtctcggtgagacaaatcgtgaatttttgcag
gccgcgtggagcgccgcaaccgccggggcggaggcgccgatcgatctggcctccggtgaa
ttcctgtcgctcggcgccctaagagactccctgacacaccgggtttctgctcccgcaact
ttcgaccacccgtggtggacgatgagcactttccgccgcgggccagcagctggcgaggcg
gaggttctgcccgaagaactcggtactgacgagatccttgccgtgcgagtcgagggcgag
tctgtactcagctttggttctgatatcgagggcgcgctgggctatgtccggtcgcgcctt
gccgacgggtggagtgttgtgctcaccgcgccaggagccggcaccagtgagcgtaccgat
caggtgctcgccgagcatgaagtggcggcgcgcagtgtggccgatctaccgaccgagctc
gagccaggcctcgcttatgttgtccaagcctcggtagatcacggcttccagctcgcggag
gcacggcttgccctgcttaccgacaccgagttctacggccgtgccgcagggtatgactcc
cgtgtcgtgaagaagctggcttcgcggcgcaagaacgttgtcgatccgttgcagcttgcg
ccaggagacttcgttgtccatgcaacgcacggcattggaaaattcgttgaactctcacag
cgtgaggtgtctaccggtggtcgcaacccggtcaaaactcgacgagagtatctggtgctc
gagtatgcacccagcaagcgcggctacccgggtgacaagctgctcgtccccaccgatcaa
ctcgatctgctgtcgcgctacatcggaggcgaggcaccggcgctcagcaaaatgggtggc
agtgactgggcgcaggctaagagcaaggcgcgccgagcggttcgcgacattgctgtcgag
ctggtcaagctgtattcggctcgaatggcctcacgtgggtacgctttttccccggatact
ccgtggcagcgtgagcttgaggaggcttttccttttgtggagactcccgaccagctcacc
gtgattgatgaggtcaaagccgatatggagcggtcgattccgatggaccgtctcctctct
ggcgatgttggcttcggaaagaccgaggtggcggtgcgtgccgctttcaaagcgatccaa
gatggtaagcaggtcgcgatgctcgtccctaccacgctgcttgtgcgccagcacctcgag
acgtttcaggagcgtttcgccggttttccggtgcaccttcgcgccttgagtcgctttcag
ggtgcgaaggaggcgcaggagacggtggagggcctcgccgacggctccatcgatatggtc
atcgcaacccatcgtcttctgtcagacactatcgtcttcaaagatctgggcttgttggtc
atcgacgaggagcagcgttttggtgttgaacacaaagacaagctcaaagctctcaagaaa
aacgttgacattctttcgatgagtgccacgcctattccgcgcactcttgagatggcggtg
acgggcatccgcgaaatgtcgacgctggcgacgccgcccgaggagcggcaccctattctt
actttcgtcggtccctattctgagaagcaggtaacggccgcgattcgacgtgagctgctg
cgtgaggggcaggtattttttgtccacaatcgcgtttccaccattaaccgtgtcgcgtcg
cagcttgccgaactcgttccggaagcgcgtattgcggtcgcgcatggcaaactcagtgaa
tcgcacctggagcgcatcatcgttgatttctgggaacgtaagtttgatgtgctcgtctcg
accaccattgtcgagaccggtcttgatatccctaacgcgaacacgctgattgttgatcgt
gccgataaatatggtctttcgcaactgcaccagctacgagggcgagtgggtcgcggtcgt
gaacgtgcctatgcttacctgctctatgacgagctgaagccgctcagcgaaaccgctcat
gaccgcctgcacaccctcgccgctcattccgacctcggtggcggtatgcagatcgcgttg
aaagaccttgaaatccgcggagcaggcaacctgcttggcggcgagcagtcgggccacatt
cagggtgtcggctttgatctttacctccgtatgatcggtgaagccgtcgatactttccgg
ggcgaggtagtcgagggtcagaccgagttgcgactcgaactaccggtggacgcccgaatt
cctgaggactatatcgacagcgagcgactgcggttggaggcctatcaaaagttgtctgcc
gcgtcatcgccgaacgcaaaagagggaagtattgatctagtgattgaggaacttaccgat
cgctatggcgaattcccggaggcagtagagaacctcattgccgtttctcgactgcgagtg
cgggcgcagaaggcgggactgagtgatgttgtcgctatgggctctcagatgcgactcgct
cccgcgcatctgcccgattcggttcacgtgcgcctgcgccggttatatcccgcggcaaag
tatctacaacaggcaaatgcagttctcgtaccgatgcccgtcgtcgatggttcacccctc
ggcgaccgtccgctcattgaatgggtgcgggggctgcttgacgcgcttttccccgactcc
gccccggtcgtcggctga
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