Rathayibacter toxicus WAC3373: APU90_10270
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Entry
APU90_10270 CDS
T04269
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
rtc
Rathayibacter toxicus WAC3373
Pathway
rtc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rtc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
APU90_10270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtc03400
]
APU90_10270
DNA repair and recombination proteins [BR:
rtc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
APU90_10270
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
APU90_10270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_22
AAA_5
AAA_30
AAA_16
DUF87
TPR_MLP1_2
Motif
Other DBs
NCBI-ProteinID:
ALS58101
UniProt:
A0A0C5BA20
LinkDB
All DBs
Position
2254265..2256331
Genome browser
AA seq
688 aa
AA seq
DB search
MEPTRVVHPFEVVSEYQPSGDQPAAIAELSARITAGETDVVLLGATGTGKSATTAWLVEA
VQRPTLVLAHNKTLAAQLANEFRELFPKNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSV
NAEVERLRHSTTNSLLSRRDVIVVSTVSCIYGLGQPEQYLEAMVALQVGQRVDRDRLIRR
FVSMQYSRNDIDFARGTFRVRGDTIEIIPMYEELAIRIEMFGDEIEALYTLHPLTGDIVR
KLESVSVFPGSHYVASDEVMRRAIDTIQQELEQRLTELEKQNKLLEAQRLRMRTTFDLEM
MQQIGFCSGIENYSRHIDAREPGEAPHCLLDYFPDDFLMVIDESHVTVPQIGAMYEGDAS
RKRTLVEHGFRLPSALDNRPLTWEEFTQRVGQTVYLSATPGRYEMSIADGVVEQIIRPTG
LVDPEIVVKPTKGQIDDLLDEITRRTDRDERVLVTTLTKRMAEELTDFLTEAGVRVRYLH
SDVDTLRRVELLSELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQ
TIGRAARNVSGEVHMYADAITDSMRRAIDETDRRREKQIAYNRDHGIDPTPLRKKIADIT
DALVREGADTAKLLAGRDKKKKSPTLNLRREGIAATGGNDLEEIIADLNAQMLQAAGELK
FELAARLRDEVQELKRELRQMEKAGHLT
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggagccaacccgtgtcgtgcatccgtttgaggtcgtgagtgaatatcagccaagcggt
gaccagccagccgctattgctgagttgagcgctcgaatcactgcgggtgagaccgatgtt
gtgctcctcggtgccaccggtaccggtaaatccgcgacaacagcctggcttgtcgaggcg
gtgcagcgacccacccttgtgctcgcacacaacaagacgctggccgctcaactcgccaat
gagtttcgcgaactttttcccaaaaacgcggttgaatattttgtgtcgtattacgactac
tatcagcccgaagcctacgttccacagaccgatactttcattgaaaaagacagttcggtg
aacgccgaagtcgagcggttgcggcactccaccacgaactcgcttctcagtcgccgcgat
gtgattgtggtgtccactgtgtcctgcatttatggtcttggccagccggaacagtacctc
gaagcgatggtggcgttgcaagtcggccagcgggttgatcgcgatcggcttatccgtcgg
ttcgtctcgatgcagtattcccgcaatgatatcgactttgcgagaggcaccttccgagtg
cgcggcgacacgatcgaaattattccgatgtacgaagaactcgcgattcgcatcgaaatg
ttcggtgatgagattgaggccctctatactttgcatccgcttactggcgatatcgtccgt
aagctcgagtcggtctcggtcttccccgggtcacactatgtcgccagcgacgaggttatg
cgtcgcgccattgacaccatccagcaggagcttgagcagcgcttgaccgaactcgagaag
cagaacaagcttcttgaggcccagcggcttcgcatgcgtaccactttcgatctggaaatg
atgcagcagatcggcttttgctcgggtatcgaaaactattctcgccatatcgacgcgcgt
gagcctggtgaggcaccccactgcctcctggactatttccccgacgatttcctgatggtt
atcgatgagtcgcatgtgacggtgccgcagatcggggcgatgtacgagggcgacgcgtct
cgtaagcgcaccctcgttgagcacggcttccggctgccgtcagctctggataatcgtccg
cttacgtgggaggaattcacccaacgcgttggccagactgtttacctctccgccacgccc
ggtcgctatgaaatgagcattgccgacggggttgtcgagcagattatccgccccaccggt
cttgttgacccggagatcgttgtcaaaccaaccaaggggcagatcgatgatctgcttgac
gaaatcacgcgccgcaccgatcgggatgagcgagtgctggttaccactctcaccaaacgg
atggcggaagaacttaccgactttctcaccgaggcgggtgtgcgcgtgcgttatttgcat
tccgacgtggacacgctgcgccgggtcgagctgctctccgaactgcgtgccggtgtgtat
gacgtcctggttggcatcaatttgcttcgtgaaggcctcgatttgcccgaagtatccctt
gtcgcgatccttgacgccgacaaagagggtttccttcgctcgtcaacctcgctgattcag
accatcggtcgcgctgcgcgcaacgtgtccggtgaggtgcacatgtacgccgacgccatt
actgactccatgcggcgtgcgattgacgaaaccgatcgccgccgcgagaaacaaatcgct
tacaaccgtgatcacggcatcgatccgactccgctgcgcaagaaaattgccgacattact
gatgctctcgtccgtgaaggagccgataccgccaagctgcttgcaggtcgcgacaaaaaa
aagaagagcccgacgctgaacctccgcagggagggcatcgcggccactggtggcaatgat
ctcgaggaaatcattgctgacctcaacgcccagatgctgcaggccgcgggcgagttgaag
tttgaacttgctgcgcgcctgcgcgatgaggttcaggaacttaagcgcgagctgcggcaa
atggagaaggccggtcacctgacctaa
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