KEGG   Rathayibacter tritici: A6122_2623Help
Entry
A6122_2623        CDS       T04388                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rtn  Rathayibacter tritici
Pathway
rtn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rtn00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    A6122_2623
Enzymes [BR:rtn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A6122_2623
DNA repair and recombination proteins [BR:rtn03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A6122_2623
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_ligase_OB_2 RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AND17737
UniProt: A0A160KVI6
LinkDB All DBs
Position
3011730..3014225
Genome map
AA seq 831 aa AA seqDB search
MGAQQVVVVGGRRLRLTNLEKVVYPEAGLTKADVLAYYAAVARAMLPHLARRPITRKRWV
DGVGTTEHPGEVFFEKNLPSSAPYWLSRTRLAHSSRDVEYPLVDDVAGLTWLAQQAAIEL
HVPQWRVGSDGERRPPDRLVLDLDPGEGAGLAECAEVAFLARDLLEGMGLAPLPVTSGSK
GIHLYCPLDASASSDQISAVAHELARVLESDHRDLVVSDMKKTLREGKVLVDWSQNSAAK
TTIAPYSLRGRVRPAAAAPRTWEELGAEGLRHLAPDEVVERLRSDGDLLRPLLAARGAGL
EPTPERMAGFAATDASSDRLATYRSMRDASKTPEPVPEAGVVGSSSGDTFVIQEHHARRL
HYDFRLEHDGVLVSWAVPKGPPLEGDANRLAVQTEDHPLEYATFEGTIPAGEYGGGDVRI
WDEGSYALEKWREGKEVIAVLTGRPDGGLGGEPRRYALLHTGSTAGAEKNWLLHLMAPGA
AHGAQRRGRPGAPAASPAPRPAPSANRPSEAAPARHHRPMLATAGRRSDVDPGAAIEMKW
DGYRALVRVQGGTAILTSRNGNDLTAAFPDLLGPLADAAADAVLDGEIVALDSRGRPDFG
ALQTRGGLTKPREIEAAARDTPVHLMLFDLLERDSVDLTGRDYDTRRATLVDLVAENERV
HVPSVFDGDLAEAMATSRTLGLEGVVAKRRDSRYQEGRRSRDWIKLTHHRLQEVVIVGWR
EGEGGLQGSVGALLTAIPGDDGLAYSGRVGTGFSDRERRGLIDRLAEHATDEPAVSVPPL
ESRGVHWVSPVLVGEVRYRERTASGTLRQPVWRGWRADKAAAEVRVEEPEG
NT seq 2496 nt NT seq  +upstreamnt  +downstreamnt
atgggggcgcagcaggtcgtggtggtgggcgggcggaggctgcggctgacgaacctcgag
aaggtcgtctacccggaggcgggcctcaccaaggccgatgtgctcgcctactacgcggcg
gttgcccgagcgatgctgccgcatctggcgcgccgccccatcacccgcaagcgctgggtg
gacggagtgggcaccaccgagcacccgggcgaggtcttcttcgagaagaacctgccctcc
tccgccccctactggctgagccggacccggctcgcgcactcgtcgcgcgacgtcgagtac
ccgctggtcgacgacgtcgccgggctcacctggctcgcgcagcaggccgcgatcgagctg
cacgtcccccagtggcgggtgggatccgacggcgagcgccgcccgcccgaccgcctcgtg
ctcgacctcgacccgggcgagggcgcaggcctggccgagtgcgccgaggtcgcgttcctc
gcccgtgacctgctggaggggatgggcctggcgccgctgccggtgaccagcgggagcaag
gggatccacctctactgcccgctcgacgcctccgcctccagcgaccagatctcggcagtc
gcgcacgagctggcgcgggtgctcgaatcggaccaccgcgatctcgtggtctcggacatg
aagaagaccctgcgcgagggcaaggtcctcgtcgactggagccagaacagcgcggcgaag
acgaccatcgcgccgtactccctccgcggccgcgtccgtcccgccgccgccgcgccccgc
acctgggaggagctgggcgccgagggcctgcgccacctcgcgcccgacgaggtggtggag
cgcctgcggagtgacggcgacctcctccggccgctgctcgccgcccgcggtgccgggctc
gagcccaccccggagcggatggcgggcttcgccgcgacggacgcctcctcggaccggctc
gcgacctaccgcagcatgcgcgacgcgtcgaagacgccggagccggtgcccgaggcggga
gtggtgggctcctcctccggcgacacgttcgtcatccaggagcaccacgcgcggcgcctg
cactacgacttccggctggagcacgacggcgttctggtcagctgggccgtgccgaagggt
ccgccgctggagggcgatgcgaatcggctcgcggtgcagaccgaggaccatccgctggag
tacgcgaccttcgagggcaccatcccggccggcgagtacggcggcggggacgtgcgcatc
tgggacgagggcagctacgccctggagaagtggcgcgaggggaaggaggtgatcgcggtg
ctgaccggccgccccgacggcggtctcggcggcgagccccgccgctacgcgctgctgcac
accgggtcgacggcgggcgctgagaagaactggctgctgcacctgatggcgccgggcgct
gcccacggggcgcagcgacggggccggccgggcgcgcccgccgcgtcgcccgcaccccgc
cccgcaccctccgcgaaccgcccaagcgaggccgcacctgcgcgccaccaccgccccatg
ctcgccaccgccggacgcaggagcgacgtggatcccggggccgcgatcgagatgaagtgg
gacggctatcgcgccctcgtgcgggtgcagggcggcacggcgatcctgaccagccgcaac
ggcaacgacctcaccgccgcgttcccggatctgctcggaccgctcgccgacgccgctgcc
gacgccgtgctcgacggcgaaatcgtcgccctcgactcccgcgggcgccccgacttcggt
gccctgcagacccgcggcgggctgacgaagccgcgcgagatcgaggccgccgccagggac
actccggtgcacctgatgctgttcgatctcctggaacgcgacagcgtggacctgaccggc
cgcgactacgacacccgccgcgcgaccctggtcgacctcgtcgccgagaacgagcgcgtg
cacgtgccgtccgtcttcgacggcgacctggcggaggcgatggcgaccagccgcaccctg
ggcctggagggggtggtcgccaagcgccgcgactcgcgctaccaggagggcaggcgctcg
cgcgactggatcaagctcacccaccaccggctgcaggaggtcgtgatcgtgggctggcgc
gagggcgagggcggcctgcagggctcggtcggcgcgctgctcaccgcgatccccggcgac
gacggcctcgcttactccggccgcgtcggcaccggcttcagcgaccgcgagcgccgcggc
ctcatcgaccggctggccgagcacgccaccgacgagcctgccgtctccgtccctccgctc
gagtcgcgcggcgtgcactgggtgtcgcccgtgctggtcggcgaggtccgctaccgcgag
cgcaccgcctccgggacgctgcggcagccggtctggcgcggctggcgcgccgacaaggcc
gcggcggaggtgcgcgtggaggagccggagggctga

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