Rhincodon typus (whale shark): 109914251
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Entry
109914251 CDS
T06055
Name
(RefSeq) basic helix-loop-helix domain-containing protein USF3
Organism
rtp
Rhincodon typus (whale shark)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
Motif
Other DBs
NCBI-GeneID:
109914251
NCBI-ProteinID:
XP_048453795
LinkDB
All DBs
Position
6:complement(94140179..94178669)
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AA seq
2319 aa
AA seq
DB search
MPEITENQTPMHRTLRKKNRETHNAVERHRKKKINSGINKIGELIPCSPALKQSKNMILD
QAYKYISELKRQNDEILLNGGTKEQGEEIVRLRKQLNELQKENDRFAELLKANDICLHDD
PTIHWKRKFKSTKVTMVISSNQMQDDILVYTNGNQLNGNCQQVAVQSSPEQTLTTVNNNT
PETCLDIMEPIAMPDICSLANGSQLPTLVAQQDVPECLPTTRPSLNTVQCMTTSSSSTIP
SVLNVSTQLSLTNCASTTLACPANTSAQIELGHSTGSFVQNTLETANSHPTQSVLNVTTN
TCFALPLHSLQIGMPCTGVENPSGMMPQSFLGSSSVSSQRPELRSAKSPVTEYSENMLAS
HICQNAPVSVGGLVVPSPSFKLRTVSNGGVMSCCPMASSWTVCYPACTYAGISDSNSVST
FSRMSSAGNTQTTWTTLQLTGNTVHPVSQGCCSMLPVSLNENLSTRSTFSISESGQPFNN
VTVVPSTTAAYEGVSLCSTYKQLKQQVAVTMQPPLQPLPLQSVLAQPQIPVQPAAKMVSL
LPPLQVIQMTRPAGTSVSSTPNNPNLIIFQPANPTSPAVVRGALNSQAPGQQIVIIQAAS
QNAVSVVPAQTSNRLPTLDSSQLICSNGTAQNTLSFQTVGGKHLVHILPRPVSSSASMSS
QPCTTVGSSQQQTISVNGQLFALQPVKQTGASSQNTMQIIQPTTSADPNTNVALNTFGAL
TNLSQSISQMAEQGGLQLSSDHTPSSSAPAKSQVISGTTSASDTTMANTSTDISRTSSWH
TSSSCSKTSPLGPPSTCKTKKLQKKPLSTKQGTTRKATCNGSKSKMGANCVQNNKSIKDI
SLHSLTSGDQILSSQGLVSQQSSLSQIPTLVAATVVTSVTSQEGVDRQQSAVRLSQHVHP
SRLTEPAVAESFSQEQPDILSEISAASALAVSLPPSSSRGDLVKNVSHVQSPPCVISDVS
TSVPPSSLYSSNAALQASRAFSIDKGSDLVDLQTAVANVCHTPGVTSVSAQLESLAAAQH
QCSGSDKEKSPDWHKGPLEMSKFAATKEVSNQVSSSIIHGVTHGEKTSNEKSSLLSFVKD
SCADSELCVDSSGETSTGMSFYEKGEPHKDIMLVSTEIESGVQQQLCNPDQENMGGPLIV
HRQTESPMSTSSGSSRGFSVASMLPDTTREDASCIGTMSNTFNNYSLSEPNDIVALAARA
IFEHGSPGKGLTSDVTLCDVQSKVQKIPFAEKEACASQQSVKSLSVKENSPNLTEASAAE
GQTQQSLPMDTNSKGMPITKTSISVVKEISNMPLICTSSGSANLSVINRACHSQANQMHV
CSGQTQFTEQLPVCAPADLCSEATTYTEQSSQPTLLTEYSHEHLNSVKGNSQSSLALEPH
LKQSNESRKDATKRTGPDDHLISTAKRQKQCQNAAMRLEGKSTVSTVPEQRISECSQTFI
SQLPTNSSSLLVSSSNPGPTDSLSSLFPPTNFPTSNATETLRPTETHCNVQPRIQEGQGQ
GQGQGQQLQQHVVSQQTVSSQTGLNVHHSHMYYKHHQGQIRERNLYHLQHHHPHNESSIQ
PHAHSAQQPRTAQQEIQMQKKRGVMRGSQAPQLSMQQKQHPSGNSQGRQKGNHHHHHPHH
HHQQQLQQMPHPHFGNSQQDKRCDNSVNNRNHHSSHTQNLHSQDLMHQQQQDNARSGPQG
SGTPSEQAGQSRIQRLLTSRSLDQQMASKSNTVSRPSEMQFTTHRQERNRISSYSAEALI
RKAPSNAESRMGMAVQSPRNNLEQSEMRTYLDLSINKNLPVHTLHTKLALDHCINSDVQG
LSDCPPFKVNVTTQGVGTFEVQSSRGNEMVNSMPAHRGMQSHGFKLGQGTVTERQARLPY
LPMQGISSGSGVSLRENEGSCHQSFMQSLLAPPLNEQIGASQRSVSEHPRNTQCLPPATI
EYSCPSAREGVHIRRDGELQNRESCDMTLGAHSSRNSSLSISYSNPSSVADSQGRNTSPN
VSAQKNSLRMNESQGNKCHPNSQVSPNVHGAVRPVMSHATVSHGGNEQGHSIQQPNSSGV
TQRVRHPAQEGSASKMRQTDRPRSGNHRSGNVFEHGLQLPLASSNSMILGRQQPVGARAG
SIVRFMTDGQQLPNDNLTPDQHSLSQNFGFPFIPESSMNPPINANPSFIPPVTQPGANRT
PALIPVEPQNPLSSFYPPYSPAHPNLSNDLSIPYFSNQIFSSPSTEKTNTGGLNNPFGSI
LSPPRPVGFPQPNFPLLPEIPARPMANTSSITPHLSNFNLTTLFPEIAAAPLAPDSTAMP
MSPLLPLTNPALSDVSKQHSNRSAHNISHILGHDGSSAV
NT seq
6960 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaattacagaaaatcagacacctatgcatagaactctcaggaagaaaaaccga
gaaactcacaacgcagtggaaaggcatcgaaagaagaagattaactctggaataaataaa
attggagaacttattccatgctctcccgccttgaagcagagtaagaacatgatactagat
caagcatacaagtacatctccgaactgaagaggcagaatgatgaaattctattgaatgga
ggaacgaaagagcaaggtgaagaaattgtaaggcttcggaagcagttgaatgagctacaa
aaagaaaatgaccgttttgcagagttactaaaagccaatgacatctgcttgcatgatgac
cctaccattcactggaagaggaaattcaaaagtacaaaagttacaatggttatttcttcc
aaccaaatgcaagatgatatattggtctacacaaatggaaaccaattaaatggaaattgc
caacaagttgcggtacagagttcaccagaacagactcttaccacagtgaacaataataca
ccagaaacatgtctcgatataatggaacccatagcaatgcctgacatttgctctttagca
aatgggtctcaacttccaacactggtcgcacagcaggacgttcctgaatgtcttcctaca
accagaccttctctgaacaccgttcagtgtatgaccacctccagtagcagcactataccg
agtgtgctgaatgtttctactcagttgtcccttaccaactgtgcatcaaccactttagct
tgtcctgcaaacacttctgcacaaattgagctgggacattctacaggcagttttgtgcag
aacaccttggaaactgccaacagccatcctacacagagtgttctcaatgttactactaat
acttgctttgccttgccattgcattcactgcagattggtatgccatgtacaggggtagag
aaccccagtgggatgatgccacagtcatttttggggtcttcgtctgtgagtagccagaga
cctgagttgaggtcagcaaagtctcctgttactgaatattctgaaaatatgttggcatca
cacatttgccaaaatgctcctgtgtcagttggtggtcttgtcgttccatcaccatctttc
aaactgaggacagtatctaatggaggtgtgatgtcttgttgtccaatggccagttcatgg
actgtgtgttacccagcctgtacatatgctggcatttcagactcaaacagtgttagtacg
ttttcacgcatgagttctgcaggcaatacacaaactacatggaccactttacaactaaca
ggcaataccgttcatcctgtcagtcaggggtgctgtagtatgttgccagtgtcactaaat
gaaaatctgagcaccagaagtacgttctccatttcggaaagtggccaaccgtttaataat
gttactgtagttccttcaactacagcagcgtatgagggggtttcattgtgttccacatac
aagcaactcaagcaacaggtggcagttaccatgcagccccccctgcagccactacccttg
cagtcagttttagcgcagccacaaattccagtccagccagctgccaaaatggtctcgttg
cttccccctctgcaagtaattcagatgacccgccctgcagggacatctgtctcttccact
cccaacaatccaaatctgatcatcttccagccagctaatccaacctcacctgctgtagtg
agaggtgccctcaacagccaggcaccaggtcagcaaattgttattatacaagcggccagt
cagaacgctgtatccgtagtcccagctcaaacgagtaataggttaccaactcttgactcc
agtcaactgatatgcagcaacgggactgcacagaacactcttagttttcagacagtggga
gggaagcaccttgttcacatattgccacgccctgtttcttcatctgcttccatgagctct
cagccctgcactacagtgggatcaagccagcagcagactatctctgtcaatggccaatta
ttcgctctacagccagtaaagcagacaggggcctccagccagaacactatgcaaatcatt
cagccaacaaccagtgccgatccaaacaccaatgtggctcttaatacttttggcgcattg
acaaacctcagccaaagtatctctcagatggcagagcaagggggcttacaactgagtagt
gaccacacacccagctcttcagctcctgccaagagccaggttattagtggcaccacctct
gcatctgacaccacaatggccaacacgagcacggacatatcaaggacatcttcatggcac
acaagcagttcatgctccaaaacctcccctcttggtccaccctctacctgtaaaacaaaa
aagctgcaaaagaaacccctctctacaaaacaaggaaccacaaggaaggccacgtgtaat
gggagcaaatcaaagatgggtgccaattgtgttcaaaataacaaatccatcaaagacatt
tcattgcattcactaaccagtggtgatcaaattttgtcatcgcaagggttggtatcccag
caatcatcgctgtctcagattccaacattagtggcagctacagtggtcacttctgtcact
tcacaggagggagtggacaggcagcagtcagcagtcagactttctcaacatgtacaccca
tcacgtttaacagaaccagcagtggctgagtcattctctcaagaacagcctgacatactg
tcagaaatttcagctgcgtcagcattagctgtatcactgccaccttcttcatctcggggt
gatttggtcaagaatgtttcacatgtacaatcccctccatgtgtaatctcagatgtatcg
acatcagttccgccgtcatcactgtacagttcaaatgcagctcttcaagcatcaagagca
ttttcaatagacaaaggcagtgacctagtggatttgcaaactgctgtcgcaaatgtctgc
cacacacctggggtaaccagtgtttctgcacagttagaatctcttgcagctgcacagcac
caatgcagcggaagtgacaaagaaaagagcccagactggcacaaagggccattagaaatg
agcaagtttgcagcgactaaagaagttagtaatcaagtcagcagtagcatcattcatgga
gtgacgcatggagaaaaaacatcaaatgagaagagctccttgctctcttttgtgaaagac
tcctgtgctgacagtgagctctgtgttgacagctctggagaaacctcaactggcatgtcg
ttttatgaaaagggtgaaccccataaagacattatgttggtaagcacagagattgaaagt
ggtgtgcagcagcagctgtgcaaccctgatcaagagaatatgggaggtccgttaattgtg
caccgccagactgagtcacccatgtccaccagctctggcagtagccgtggcttttctgtt
gcctccatgctgccagataccacccgggaggatgcatcttgcatcggtacaatgtccaac
acttttaataactacagcttatccgagccgaatgacattgtcgcccttgctgctagagca
attttcgaacacggaagtccaggaaaaggtttgacttcggacgttactctatgtgatgtt
cagtccaaagttcagaaaattccttttgcagagaaagaagcgtgtgcaagtcaacaatct
gttaaaagcctgagcgttaaagagaatagtccaaatttgacagaggctagtgcagctgaa
ggtcaaacacaacaatcactgccaatggataccaactcaaaaggaatgcccattactaag
acttcaatttctgttgtaaaagaaatctcaaatatgccactgatttgcacatcttctggc
tctgctaacctgagtgttattaaccgtgcctgtcatagtcaagctaatcaaatgcatgtc
tgctcaggtcaaacccaatttacagagcagcttccagtctgtgctccagctgatctatgc
agtgaagccactacatataccgaacagtcttcccaacccaccctgttgacagaatattct
catgagcatctaaattctgtgaaaggtaactcgcagtcttctcttgctttggagccacat
ttgaagcaaagcaatgagagtcgaaaagatgcaacaaagcggacagggccagatgaccac
ttaatctcaacagcaaagagacaaaagcaatgccagaatgcagccatgagactagaagga
aagtccacagtaagtacagttccagaacaacgtatttccgaatgtagtcaaacatttatc
agtcagttgccaacaaattcttcaagtttattagtctcaagtagtaatccaggacccaca
gatagtcttagctccttatttccaccaactaacttcccaacttcaaatgctactgaaact
ttaaggcctacagaaactcattgtaatgtacagccacgaattcaggaaggacaaggacaa
ggacaaggacaaggacaacagctgcagcagcatgtggtatcccagcagactgtctcttca
cagactggcctgaatgtccaccacagccacatgtattacaaacaccatcaggggcagata
cgagaaaggaacttataccacctccagcatcatcatccacacaatgagagctcaatccag
ccccatgctcacagtgcccagcagccccgcactgcacagcaagaaatccaaatgcagaag
aaacgaggggtcatgcgaggcagtcaagctcctcaactgtcaatgcaacaaaagcaacat
ccaagtggcaatagtcaaggacgacagaaagggaatcaccatcatcatcatccgcaccat
caccatcagcaacaacttcagcaaatgccgcacccacactttggaaattcacaacaagat
aaaaggtgtgacaattctgtgaataacagaaaccatcacagcagccatactcagaacctt
cacagccaggatctcatgcaccagcagcagcaagataatgctagaagtgggccacaggga
tccgggaccccttcagaacaagctgggcagtctcgcatccagaggttgttgacctcgagg
tcattggatcagcagatggcttctaaatccaacaccgtgtcgcggccttcagaaatgcag
tttaccactcacagacaagagaggaacagaatttctagttattctgcagaggctttgatc
agaaaagcaccttcaaatgcagaatcccgaatgggaatggcagtgcagagccctcgaaat
aatctggagcagtctgaaatgcgaacctatcttgatttatcaataaacaaaaacctgcct
gttcacaccttgcatactaagttggctctggaccattgcataaattctgatgttcaaggc
ctttctgactgtcctccttttaaagtgaacgtgacaactcaaggtgtcggcacttttgag
gtgcagtcatcaaggggtaatgagatggttaatagtatgccagcacacagaggaatgcaa
tcacatggcttcaagctggggcagggtacagtgactgaaaggcaggccaggttgccttat
ttgccgatgcaaggtatctcatcaggaagtggagtttctttaagggagaatgaaggttcc
tgtcatcagagtttcatgcaaagtctactagctcctccactcaatgagcaaataggtgca
agccaaaggtcagtgtcagaacatccaaggaacacccagtgtctccctccagcaactatt
gaatacagttgcccatctgcaagagaaggagttcacattagaagggatggtgagctgcag
aatcgtgaaagttgtgacatgactttaggtgcacacagttctagaaacagctctttaagc
atctcctactcaaatccttcctctgtggcagacagtcagggccggaacactagtccaaat
gtgtcagctcagaaaaactcccttagaatgaatgaaagtcaaggaaataagtgccatcca
aattcacaggtctctcccaatgtgcatggagcggttaggcccgtgatgtctcacgctaca
gtttcccacggtgggaatgaacaaggacactcaattcagcagcccaattcctcaggggtt
acccagcgtgtacgccacccagcccaggagggctcggcttcaaagatgcggcagactgat
cggcctcgctctggaaaccacagaagtgggaatgtttttgagcatggacttcagttaccc
ctagcgtccagtaacagtatgatccttggccgtcagcagccagtgggggctcgggcagga
agcattgtgcgtttcatgactgatgggcagcaattaccgaacgataatttaactcctgac
cagcactcactgtctcagaactttggattccctttcatcccagaaagtagcatgaaccct
ccaattaatgcaaacccatcattcattcctccggtaacccagccaggtgcaaatcgcacc
ccggctctcataccagttgaaccacaaaatcctctgtcctcattttaccctccgtactct
ccagctcatcccaacctttccaacgacctctccataccctacttttccaatcagatcttc
agcagtccaagcacagagaaaaccaacactgggggacttaacaacccgtttgggtccatc
ctctctccccctcggccggttggcttcccacaaccaaactttccccttctccctgaaatc
ccagccagacctatggccaacacttcaagcatcaccccacacctctccaacttcaatctt
accactctcttccccgaaattgctgctgctccccttgccccagatagcacggccatgccc
atgtcacctttgttgcctttaaccaatccagctctttcagatgtctctaaacaacactca
aaccgatccgctcacaatataagccacatactgggccacgatggtagctctgctgtgtag
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integrated database retrieval system
