Rhincodon typus (whale shark): 109915908 Help Entry 109915908         CDS       T06055                                  Name (RefSeq) roquin-1-like isoform X1   KO K15690   RING finger and CCCH-type zinc finger domain-containing protein Organism rtp  Rhincodon typus (whale shark) Brite KEGG Orthology (KO) [BR:rtp00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:rtp03000]     109915908    04121 Ubiquitin system [BR:rtp04121]     109915908 Transcription factors [BR:rtp03000]  Eukaryotic type   Zinc finger    Cys3His zinc factors     109915908 Ubiquitin system [BR:rtp04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     109915908 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Roquin_1_2-like_ROQ ROQ_II zf-CCCH zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 Prok-RING_4 zf-C3HC4 zf-CCCH_4 zf_CCCH_4 zf-RING_10 zf-C3HC4_2 Motif Other DBs NCBI-GeneID:  109915908 NCBI-ProteinID:  XP_020371172 LinkDB All DBs Position 10:complement(1866154..1966995) Genome browser AA seq 1154 aa AA seqDB search MPVQAPQWTDFLSCPICCQTFDENIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD IDMLPVNSALLQLVGAQIPEPQSVTLCTGAENTKHYEEAKKCVEELALYLKPLSSTRGVV LSSAAQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP DQWSSLLYGDLSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL ANIDPSPDAPPPTWEQLECGLVAVKTVVHGLVDFIQNHSKKGTDQQQSAQSSKYKTSMCR DLRQRGGCPRGASCTFAHSQDELEKFRMRNKRLAAGRTLSQSLTQLSKVGGVMSVTSNTL SDEGSLETGTKPVSIQNGMVAASSSIAQLISRGTDCAYDLTMKSGKMSDMSMSAPGSVSG SPPDSMEMSQKNSLGALPINTLSVPPRISAEMPPMPVSKPIQMVPRGSQMYPPTQQPDVY YQDPRSSATSYEAAQCPPNLYYPHHSSGTVTPYLPQYRRTSNVPEPPMPPSTLQYQDHYP AYISERMGSSQYSSPQQYPLAQPVSGMYPAHYDGRRVYHPPQSYTREEMRNSPIPVDLPS AVTNYVTEPRDRYAPENYYTVSPHPNQIRPPYRDPHVRVPQHQPQPQPSLDYLHRRRKEL MAQLEERKTISPPPFPPTAAMPSSFVDVSPEYSDEDLKAVKKYKDHEYAAQYSPWSCDTI GSYIGSQNAQPKDIMPSSGMEMNNVDSKGLREQLMNLDLQRRAAESKEEDPIIPFGELPT VSKFGAISRTSKTSYQTTGPVQAVASQGIATKPISVSDYNPYGSHNSWANSPVSYSSHQT MPTQGHFIDRERLNMQEVAASGKHTVAQLPPTDREQLRLELQQVNQQISQQNQLRGMEPA NSPVLLQREVSSQAPPQHTSWPSLMSSEQLSLELHQVEREIGKRKHELETESRPSLDIQY KLASNNQTENGQSEQQHKAPEDLQPSLSEGSKVGASSFMTESAINTLTSKCNSLNLASDT KGAGDRCDSQQNGI NT seq 3465 nt NT seq  +upstreamnt  +downstreamnt atgcctgtgcaggctccgcaatggacagacttcctctcctgcccaatctgctgccagacg ttcgatgagaacatacgcaagcccatcagcttaggctgtggacacacggtctgcaagatg tgtctcaacaaacttcatcgcaaagcctgtccttttgatcaaaccactattaacacagat atagacatgttacctgtgaactctgcactgttacaactggtgggagcccagattccagag ccgcagtctgtcaccttgtgtacaggagcagaaaataccaaacactacgaagaggcaaaa aaatgtgtggaggaattggcactgtacctcaaaccactcagcagtaccagaggtgtggtg ctcagcagcgctgcacagagcgtgctgagcaggcccatgcagaggaagctggttacactg gttcactgtcagctggtggaagaggaaggccggattcgggcaatgagagctgctcgctca ctgggggagcgcacagtcactgaactcatccttcagcatcaaaacccacagcaactctca tccaacctctgggcagctgtccgagccaggggctgccagtttcttggaccagctatgcag gaagaagccctcaaactggtcctgcttgcactggaagatggctccgcactctctagaaaa gtcttggtgttgtttgtcgtccagaggttggagcctcgatttcctcaagcctcaaagacc agcattgggcacgtggtgcagctgctgtacagagcctcctgtttcaaagtcacaaagcga gatgaagattcctctctgatgcaactgaaagaggagtttcggacgtatgaagcactacgg cgggaacacgactctcagattgtgcagatcgccatggaagctggccttcgcattgctcct gaccagtggtcttctctcctttacggagacctgtcacacaaatctcacatgcagtccatc attgacaagttgcagacacctgcctccttcgcacagagtgttcaggagctgacaattgcc cttcaacgaactggagaccctgccaatctaaaccgccttcgtccacacctcgagttactg gccaacatcgaccccagtccagatgcccctcctcccacatgggagcagctggaatgtggc ctggtggcggtaaagacagtagtgcatggcctggtggactttatacagaaccacagcaag aaaggcactgaccagcagcagtcagctcaaagcagcaaatacaaaacaagcatgtgccgg gacctgaggcagcggggaggctgtcctcgaggagccagttgcactttcgcccattcccag gatgaacttgaaaaatttcgcatgcggaacaagaggttagcagccggccggaccctcagc cagtccctgacccagctcagcaaggttggaggggtgatgtcggtaacgtccaacacctta tcggacgagggctccttggaaactggcacgaagcctgtgtccattcagaacggcatggtg gcagcgagcagcagcattgcacagctgatctcccgtggcaccgactgtgcctacgacctc accatgaagtcgggcaagatgagcgacatgagcatgagcgcaccaggctcggtgtcggga tcaccacctgactcgatggaaatgtcccagaagaactcgctcggtgccttgcccatcaat accctgtctgtgccaccccggatcagtgcggagatgccacccatgccagtctccaagcca attcagatggtgccgcggggatcgcaaatgtacccgcccactcagcaaccggacgtgtac taccaggacccgcggagctctgcaacttcgtacgaggctgcacagtgtccaccaaacctt tactatcctcaccattcttcaggaactgtgactccatacctgccgcagtatcgacggact agcaatgtgccagaacctccaatgcccccttccacccttcagtaccaggaccattaccca gcctacatttcagagaggatgggaagttctcagtactctagccctcagcagtacccactg gcacagccggtgtcaggaatgtacccagcacattacgatgggcgccgggtttaccatcct ccacagtcctacacgagggaggaaatgcgaaacagcccgatacccgtggatttgccatct gccgtcaccaactatgtcacagagcccagagaccgctatgcccctgaaaactactacact gtgagtcctcaccccaaccagatcagacctccttacagggatcctcatgtcagggtgcca cagcaccaacctcaacctcagccaagcctggattatcttcaccggcgcaggaaagagtta atggcccaactcgaggagaggaagaccatttctccacctcccttccccccgaccgcagca atgccatcttcctttgtcgatgtttcccccgagtattctgatgaggacctgaaagcagtc aagaagtacaaggaccatgaatacgccgctcaatactcgccctggtcttgcgacactatt ggttcctacattggcagccaaaatgcacaacctaaagacattatgccttccagtggaatg gagatgaataacgttgacagtaaaggcctgagggagcagctgatgaatctggaccttcag aggagagcagccgagagcaaggaggaggatcccatcataccctttggggagttgccaact gtttccaaattcggtgccatttctcgcacctctaaaaccagctatcagacaacagggcca gtgcaggcagtggcctcacaaggcattgccacgaagcccatcagtgtctcggattacaat ccatacggaagccacaacagttgggcgaactcaccagtctcgtactcgtcacaccaaacc atgcctactcagggacatttcattgacagagagagactgaacatgcaagaagtggctgcc tctggaaaacacactgtggctcagttgcctccaacggacagggagcaactgaggttggag ctacagcaagtgaaccagcagatcagccagcagaaccagctgcgaggaatggagcctgct aacagcccagtgctgttgcagcgagaagtctccagccaggctccaccacagcacacctcg tggcccagcctgatgtccagcgagcagctgagcttggagctgcaccaggtcgagagggag attggcaagagaaagcacgagctggaaacggaaagtcgtccctcgcttgatatccagtat aaactggcatctaataatcagactgagaatggacagtctgagcagcagcataaagcccct gaggatctgcagccttccctcagtgaggggtcaaaggtcggggcctccagctttatgaca gaaagcgccatcaacactctaaccagcaagtgcaactctctgaacctggcttctgatacc aagggagcaggtgaccgctgtgacagccagcagaacgggatttaa

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