Rhincodon typus (whale shark): 109919518
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Entry
109919518 CDS
T06055
Name
(RefSeq) LOW QUALITY PROTEIN: H-2 class I histocompatibility antigen, Q9 alpha chain-like
KO
K06751
MHC class I antigen
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04144
Endocytosis
rtp04145
Phagosome
rtp04218
Cellular senescence
rtp04514
Cell adhesion molecules
rtp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
109919518
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
109919518
04145 Phagosome
109919518
09143 Cell growth and death
04218 Cellular senescence
109919518
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109919518
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtp04147
]
109919518
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
rtp00537
]
109919518
Exosome [BR:
rtp04147
]
Exosomal proteins
Proteins found in most exosomes
109919518
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
rtp00537
]
Antigens
109919518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MHC_I
C1-set
MHC_I_3
Ig_3
ig
DUF5305
Motif
Other DBs
NCBI-GeneID:
109919518
NCBI-ProteinID:
XP_048472678
LinkDB
All DBs
Position
35:complement(10344181..10363463)
Genome browser
AA seq
345 aa
AA seq
DB search
MIGLLVLGLLCGELSAATHSVRYFHTAVSSVPGFPEFVIVGYVDGVQFVKYDSDWKVLIP
RKQWMVELEGPQFWQRKLSLAKGLENHFKRYVPILMSRTNQTXGIHTYQMVTGCDLRNDG
TVRGFNQFGWDGQDLISFDKDHMVWVTPVPWAESIKNRWDQSVVGNQEWKYFLEKECVQW
LRKYLDYGQRELRVVAPIVSFTRLGDSNQLSCLVTGFYPQAIEVTLWRDGVLIDETLSTG
ILPNYDKTYQIRKWIEFDPEDQAEYSCRVEHSGLEEKLVVIYNPKSHAQVPVTVGIVFGV
IGIIAFAVGAVVIVVIYKKKGGVKNNYSPTNSSDETKSSDRSSIS
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgatcggactgttagtgctggggcttctgtgcggagagctctctgcagccactcactct
gtccggtatttccacactgctgtgtcatcagttcctggtttcccagagtttgtgattgtt
ggttatgtggacggggttcagtttgttaagtacgacagcgattggaaagtgttgatcccc
cggaaacagtggatggtggagcttgaggggcctcagttctggcagcggaaactatccctc
gctaaggggttggagaaccatttcaagcgctatgttccaatacttatgtcacggaccaac
cagacgtaggggatccacacataccagatggtgactggctgtgacctgaggaatgatggg
actgtgagggggttcaatcaatttggatgggacggacaagatttaatcagcttcgataag
gatcacatggtgtgggtgacaccagtgccctgggcggaaagcatcaaaaacaggtgggac
cagtctgtggtgggcaaccaggagtggaagtatttcctggagaaggaatgtgtccagtgg
ctgaggaaatacctggattacggacagagggaactgagagtcgttgcccccattgtgtcc
tttacccgtctgggtgattctaaccagctgtcctgtctcgtcactggattttaccctcaa
gccatcgaggtgactctgtggagggatggagtgttgatcgatgagaccctgtccactggg
atcttacccaattatgacaagacctaccagatccggaaatggatagagtttgatccggag
gatcaggccgagtattcctgtcgggtggagcacagtgggctggaggagaagctggtggtg
atttataacccgaagtctcacgcccaggttcctgttactgttgggattgtatttggagtc
atcgggatcatcgctttcgctgttggggctgtcgtcattgttgtcatttacaagaagaaa
ggaggagtgaagaacaactacagtcccacaaactcttctgatgaaacgaaatcctcagac
cgttcttccatttcgtga
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